RNA id: TU2492422


Basic Information

Item Value
RNA id TU2492422
length 245
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G2180539
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36897871 ~ 36898340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtactcagtaatgtgttgttttggatttgccccaaataaaacactttttattcatgacaaaaagtgaattgctttgcgccattctttgcagtattactttagtgccttgttgcaaataggatgcatgttttggaatatttggatTCCTTCTtttcaggcttccttcttttcactctgtcaattaggttagttttatggaggatctttagtgaccacagagagtcaggacacacgTTTAatatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2492316 lncRNA downstream 67710 36828934 ~ 36830161 (-) True G2180443
TU2492354 lncRNA downstream 95985 36801661 ~ 36801886 (-) True G2180481
TU2492353 lncRNA downstream 96723 36800844 ~ 36801148 (-) True G2180480
TU2492292 lncRNA downstream 195728 36701918 ~ 36702143 (-) True G2180421
TU2492291 lncRNA downstream 196053 36701525 ~ 36701818 (-) True G2180420
TU2492459 lncRNA upstream 54496 36952836 ~ 36962231 (-) False LOC110510199
TU2492460 lncRNA upstream 54496 36952836 ~ 36962231 (-) True LOC110510199
TU2492463 lncRNA upstream 58706 36957046 ~ 36957520 (-) True G2180575
TU2492467 lncRNA upstream 62242 36960582 ~ 36961143 (-) True G2180579
TU2492476 lncRNA upstream 96809 36995149 ~ 36995363 (-) True G2180588
XM_021591578.2 mRNA downstream 55741 36832263 ~ 36842130 (-) True LOC110510202
XM_036967825.1 mRNA downstream 56125 36832263 ~ 36841746 (-) False LOC110510202
XM_036967824.1 mRNA downstream 57387 36832263 ~ 36840484 (-) False LOC110510202
XM_036967492.1 mRNA downstream 102416 36705887 ~ 36795455 (-) False LOC110510203
XM_036967493.1 mRNA downstream 102416 36707680 ~ 36795455 (-) True LOC110510203
XM_036967718.1 mRNA upstream 31933 36930273 ~ 36935334 (-) True LOC118945293
XM_036967967.1 mRNA upstream 36969 36935309 ~ 36950122 (-) False LOC110510200
XM_036967968.1 mRNA upstream 36969 36935309 ~ 36950122 (-) False LOC110510200
XM_036967969.1 mRNA upstream 36969 36935309 ~ 36950122 (-) False LOC110510200
XM_036967970.1 mRNA upstream 36969 36935309 ~ 36950122 (-) True LOC110510200
TU2491926 other downstream 301498 36534097 ~ 36596373 (-) True LOC110510209
TU2491922 other downstream 301565 36534097 ~ 36596306 (-) False LOC110510209
TU2491931 other downstream 385682 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other downstream 390751 36506540 ~ 36507120 (-) True G2180120
TU2491621 other downstream 935039 35961984 ~ 35962832 (-) True G2179862
TU2492418 other upstream 78814 36977154 ~ 36979761 (-) True LOC110509384
TU2492475 other upstream 83617 36981957 ~ 36982709 (-) True G2180587
TU2493150 other upstream 334529 37232869 ~ 37233899 (-) True G2181143
TU2493155 other upstream 336453 37234793 ~ 37239339 (-) False LOC110510193
TU2493152 other upstream 336606 37234946 ~ 37239793 (-) False LOC110510193

Expression Profile