RNA id: TU2492463



Basic Information


Item Value
RNA id TU2492463
length 447
lncRNA type intronic
GC content 0.33
exon number 2
gene id G2180575
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36957046 ~ 36957520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atttaattaattaagaatttgaattcaggctgtaacagcaaaatgtggaataagtacaTTGTTCTGATGATTATATGGAAATGACATTGATTTAGCAACCTCTTAGTCAGGTTAAGTCAGTGTATTTAAGTTTAAGTTTTACTGTCATTTCAATGTTTACAGTGCTGGTTGAAATTAGATGAAAACGGTAGTGGTTGAGCCCACATCACACAATTGACAAATTATGTTGAAACAATATTGATTCCACcagtgtgcccagtggggagtgagtgagtgaccgAGTGATTGATGAGTgattgaatgagtgagtgagtgagtgagtgtaaaTAAGTGTAAATATagtgtaaatatatcactagccactttaaacaatgctaccttatataatgttacttaccctacattattcatctcatatgcatacgtatatactgtactctatatcat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2492422 lncRNA downstream 58706 36897871 ~ 36898340 (-) True G2180539
TU2492316 lncRNA downstream 126885 36828934 ~ 36830161 (-) True G2180443
TU2492354 lncRNA downstream 155160 36801661 ~ 36801886 (-) True G2180481
TU2492353 lncRNA downstream 155898 36800844 ~ 36801148 (-) True G2180480
TU2492292 lncRNA downstream 254903 36701918 ~ 36702143 (-) True G2180421
TU2492467 lncRNA upstream 3062 36960582 ~ 36961143 (-) True G2180579
TU2492476 lncRNA upstream 37629 36995149 ~ 36995363 (-) True G2180588
TU2492477 lncRNA upstream 46424 37003944 ~ 37004146 (-) True G2180589
TU2492478 lncRNA upstream 48336 37005856 ~ 37022512 (-) True G2180590
TU2492479 lncRNA upstream 50247 37007767 ~ 37025924 (-) True G2180591
XM_036967967.1 mRNA downstream 6924 36935309 ~ 36950122 (-) False LOC110510200
XM_036967968.1 mRNA downstream 6924 36935309 ~ 36950122 (-) False LOC110510200
XM_036967969.1 mRNA downstream 6924 36935309 ~ 36950122 (-) False LOC110510200
XM_036967970.1 mRNA downstream 6924 36935309 ~ 36950122 (-) True LOC110510200
XM_036967718.1 mRNA downstream 21712 36930273 ~ 36935334 (-) True LOC118945293
XR_005040451.1 mRNA upstream 18389 36975909 ~ 36977676 (-) False LOC110509384
XM_021591571.2 mRNA upstream 101674 37059194 ~ 37068883 (-) False LOC110510195
XM_036967468.1 mRNA upstream 101674 37059194 ~ 37072763 (-) True LOC110510195
XM_036967193.1 mRNA upstream 277785 37235305 ~ 37238024 (-) False LOC110510193
XM_036967197.1 mRNA upstream 277785 37235305 ~ 37238282 (-) False LOC110510193
TU2491926 other downstream 360673 36534097 ~ 36596373 (-) True LOC110510209
TU2491922 other downstream 360740 36534097 ~ 36596306 (-) False LOC110510209
TU2491931 other downstream 444857 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other downstream 449926 36506540 ~ 36507120 (-) True G2180120
TU2491621 other downstream 994214 35961984 ~ 35962832 (-) True G2179862
TU2492418 other upstream 19634 36977154 ~ 36979761 (-) True LOC110509384
TU2492475 other upstream 24437 36981957 ~ 36982709 (-) True G2180587
TU2493150 other upstream 275349 37232869 ~ 37233899 (-) True G2181143
TU2493155 other upstream 277273 37234793 ~ 37239339 (-) False LOC110510193
TU2493152 other upstream 277426 37234946 ~ 37239793 (-) False LOC110510193

Expression Profile