RNA id: TU2492480


Basic Information

Item Value
RNA id TU2492480
length 418
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2180592
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37041792 ~ 37042209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccattctgttgttggggtacaccaacaccattctgttgttggggtacatccacaccattctgttgttggggtacaacaacaccattctgttgttggggtacaacaacaccattctgttgttggggtacatccacaccattctgttgttgggctacatccacagcattctgttgttggggtacatccacagcattctgttgttggggtacatccacaccattctgtttttggggtacatccacaccattctgttgttggggtacatccacaccattctgttgttggggtacatccacaccattctgttgttggggtacatccacaccaatctgttgttggggtacatccacaccattctgttgttggggtacatccacaccattctgttattggggtacatccacaccattctgttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2492479 lncRNA downstream 15868 37007767 ~ 37025924 (-) True G2180591
TU2492478 lncRNA downstream 19280 37005856 ~ 37022512 (-) True G2180590
TU2492477 lncRNA downstream 37646 37003944 ~ 37004146 (-) True G2180589
TU2492476 lncRNA downstream 46429 36995149 ~ 36995363 (-) True G2180588
TU2492460 lncRNA downstream 79561 36952836 ~ 36962231 (-) True LOC110510199
TU2492481 lncRNA upstream 270 37042479 ~ 37042741 (-) True G2180593
TU2492482 lncRNA upstream 957 37043166 ~ 37043370 (-) True G2180594
TU2492486 lncRNA upstream 5078 37047287 ~ 37047539 (-) True G2180598
TU2492490 lncRNA upstream 6082 37048291 ~ 37048982 (-) False G2180600
TU2492491 lncRNA upstream 7172 37049381 ~ 37050622 (-) True G2180600
XR_005040451.1 mRNA downstream 64116 36975909 ~ 36977676 (-) False LOC110509384
XR_002471537.2 mRNA downstream 79534 36952839 ~ 36962258 (-) False LOC110510199
XM_036967968.1 mRNA downstream 91670 36935309 ~ 36950122 (-) False LOC110510200
XM_021591571.2 mRNA upstream 16985 37059194 ~ 37068883 (-) False LOC110510195
XM_036967468.1 mRNA upstream 16985 37059194 ~ 37072763 (-) True LOC110510195
XM_036967193.1 mRNA upstream 193096 37235305 ~ 37238024 (-) False LOC110510193
XM_036967197.1 mRNA upstream 193096 37235305 ~ 37238282 (-) False LOC110510193
XM_036967194.1 mRNA upstream 193096 37235305 ~ 37238283 (-) False LOC110510193
TU2492475 other downstream 59083 36981957 ~ 36982709 (-) True G2180587
TU2492418 other downstream 62031 36977154 ~ 36979761 (-) True LOC110509384
TU2491926 other downstream 445419 36534097 ~ 36596373 (-) True LOC110510209
TU2491922 other downstream 445486 36534097 ~ 36596306 (-) False LOC110510209
TU2491944 other downstream 534672 36506540 ~ 36507120 (-) True G2180120
TU2493150 other upstream 190660 37232869 ~ 37233899 (-) True G2181143
TU2493155 other upstream 192584 37234793 ~ 37239339 (-) False LOC110510193
TU2493152 other upstream 192737 37234946 ~ 37239793 (-) False LOC110510193
TU2493153 other upstream 192737 37234946 ~ 37239339 (-) True LOC110510193
TU2493346 other upstream 441439 37483648 ~ 37484650 (-) True nsrp1

Expression Profile