RNA id: TU2493106


Basic Information

Item Value
RNA id TU2493106
length 558
lncRNA type antisense_over
GC content 0.52
exon number 3
gene id G2181100
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37218932 ~ 37220513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACATGTGGATGGGACCATCCATTGGTCCAAGGCGAGGGGTGAGAAACATTAGTATATCAAAAACATTATTCAACCAACAGGACGACTGAGCTAAAGCTTACCGATGCGTCCGATTTTCATGCCAGAACGAGCCAGGGCACGAAGAGCAGACTGTGCTCCTGGTCCAGGGGTCTTGGTTCTGAAAGGCTGTTACCGCCAGTGGCCCTCAGCTTAATATGCAGGGCAGTGATTCCCAGCTCCTTGCACCTCTGTGCCACATCCTGGGCGGCCAACATGGCAGCGTAGGGGGAGGATTCGTCTCTGTCGGCCTTTACCTTCATACCACCAGTCACACGGCAGATAGTTTCCCTTGCCGGAGAGGTCAGTGACATGAACGAAGGTGTCATTGAAGGATGCAAAGATGTGGCAGACTCCAAAGACATTCTCGCCTTCGGCAACCTGAGGTCCCAGGGCGATGACCTGTTCTTCCTTCTTTTCCTTACCCTTGCGAGGTGCCATAGCTGCAAAGGAATGCACGTTGGTCAGCATTTAGTTTAAGCGTCAGTTACCAATCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2493175 lncRNA downstream 2472 37216187 ~ 37216460 (-) True G2181158
TU2493174 lncRNA downstream 7980 37207572 ~ 37210952 (-) True G2181157
TU2493163 lncRNA downstream 17156 37200997 ~ 37201776 (-) False G2181151
TU2493164 lncRNA downstream 17156 37200997 ~ 37201776 (-) True G2181151
TU2493061 lncRNA downstream 107232 37097858 ~ 37111700 (-) True G2181060
TU2493179 lncRNA upstream 1979 37221895 ~ 37222110 (-) True G2181162
TU2493154 lncRNA upstream 14877 37234793 ~ 37237308 (-) False LOC110510193
TU2493200 lncRNA upstream 56423 37276339 ~ 37276680 (-) True G2181182
TU2493202 lncRNA upstream 59379 37279295 ~ 37279587 (-) True G2181184
TU2493220 lncRNA upstream 95342 37315258 ~ 37315740 (-) True G2181200
XM_036967468.1 mRNA downstream 146169 37059194 ~ 37072763 (-) True LOC110510195
XM_021591571.2 mRNA downstream 150049 37059194 ~ 37068883 (-) False LOC110510195
XR_005040451.1 mRNA downstream 241256 36975909 ~ 36977676 (-) False LOC110509384
XR_002471537.2 mRNA downstream 256674 36952839 ~ 36962258 (-) False LOC110510199
XM_036967970.1 mRNA downstream 268810 36935309 ~ 36950122 (-) True LOC110510200
XM_036967193.1 mRNA upstream 15389 37235305 ~ 37238024 (-) False LOC110510193
XM_036967197.1 mRNA upstream 15389 37235305 ~ 37238282 (-) False LOC110510193
XM_036967194.1 mRNA upstream 15389 37235305 ~ 37238283 (-) False LOC110510193
XM_036967191.1 mRNA upstream 15389 37235305 ~ 37238476 (-) False LOC110510193
XM_036967192.1 mRNA upstream 15389 37235305 ~ 37238476 (-) False LOC110510193
TU2492475 other downstream 236223 36981957 ~ 36982709 (-) True G2180587
TU2492418 other downstream 239171 36977154 ~ 36979761 (-) True LOC110509384
TU2491926 other downstream 622559 36534097 ~ 36596373 (-) True LOC110510209
TU2491922 other downstream 622626 36534097 ~ 36596306 (-) False LOC110510209
TU2491944 other downstream 711812 36506540 ~ 36507120 (-) True G2180120
TU2493150 other upstream 12953 37232869 ~ 37233899 (-) True G2181143
TU2493155 other upstream 14877 37234793 ~ 37239339 (-) False LOC110510193
TU2493152 other upstream 15030 37234946 ~ 37239793 (-) False LOC110510193
TU2493153 other upstream 15030 37234946 ~ 37239339 (-) True LOC110510193
TU2493346 other upstream 263732 37483648 ~ 37484650 (-) True nsrp1

Expression Profile