RNA id: TU2493248


Basic Information

Item Value
RNA id TU2493248
length 281
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G2181221
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37348760 ~ 37349040 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttgaaacagtttaattaacatccaacactagtcattttgaaacagtttaattaacatccaacactagtcattttgaaacagtttaattaacatccaacactagtcattttgaaacagtttaacattcaacactagtcattttgaaacagtttaacatcaggcactagtcattttgaaacagtttaattaacatccaacactagtcattttgaaacagtttaacatccaacactagtcattttgaaacagtttaacatcaggcactagtcattttgaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2493243 lncRNA downstream 12265 37336264 ~ 37336495 (-) True G2181216
TU2493237 lncRNA downstream 21978 37326453 ~ 37326782 (-) True G2181210
TU2493228 lncRNA downstream 25441 37322235 ~ 37323319 (-) True LOC110509442
TU2493225 lncRNA downstream 28460 37319996 ~ 37320300 (-) True G2181205
TU2493224 lncRNA downstream 28844 37319703 ~ 37319916 (-) True G2181204
TU2493249 lncRNA upstream 139 37349179 ~ 37349414 (-) True G2181222
TU2493256 lncRNA upstream 1726 37350766 ~ 37473048 (-) False G2181223
TU2493275 lncRNA upstream 1726 37350766 ~ 37473048 (-) False G2181223
TU2493284 lncRNA upstream 1726 37350766 ~ 37424793 (-) False G2181223
TU2493302 lncRNA upstream 2952 37351992 ~ 37356081 (-) True G2181230
LOC110509442 mRNA downstream 17586 37322673 ~ 37331174 (-) False LOC110509442
LOC118936394 mRNA downstream 29943 37317863 ~ 37318817 (-) True LOC118936394
NM_001124739.1 mRNA downstream 34598 37304199 ~ 37314162 (-) True LOC100136950
XM_036967496.1 mRNA downstream 52219 37284368 ~ 37296541 (-) True LOC110510188
XM_021591566.2 mRNA downstream 107597 37235305 ~ 37241163 (-) False LOC110510193
XM_021591558.2 mRNA upstream 35281 37384321 ~ 37388245 (-) False LOC110510185
XM_021591557.2 mRNA upstream 35281 37384321 ~ 37388247 (-) True LOC110510185
XM_036967880.1 mRNA upstream 55907 37404947 ~ 37407196 (-) True LOC110509383
XM_036967585.1 mRNA upstream 142843 37491883 ~ 37498898 (-) False nsrp1
XM_036968211.1 mRNA upstream 203531 37552571 ~ 37559554 (-) False LOC118945348
TU2493152 other downstream 108967 37234946 ~ 37239793 (-) False LOC110510193
TU2493155 other downstream 109421 37234793 ~ 37239339 (-) False LOC110510193
TU2493153 other downstream 109421 37234946 ~ 37239339 (-) True LOC110510193
TU2493150 other downstream 114861 37232869 ~ 37233899 (-) True G2181143
TU2492475 other downstream 366051 36981957 ~ 36982709 (-) True G2180587
TU2493346 other upstream 134608 37483648 ~ 37484650 (-) True nsrp1
TU2493402 other upstream 187625 37536665 ~ 37538240 (-) True G2181304
TU2493441 other upstream 431542 37780582 ~ 37787673 (-) True G2181315
TU2494085 other upstream 811637 38160677 ~ 38174302 (-) True LOC110509458
TU2494988 other upstream 1565566 38914606 ~ 38914926 (-) True G2182508

Expression Profile