RNA id: TU2493269


Basic Information

Item Value
RNA id TU2493269
length 602
lncRNA type read_through
GC content 0.35
exon number 5
gene id G2181223
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37350766 ~ 37473048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taatatacacagtatatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtatatctagctggtctgtcatagtataatagagacagtagatctagcaggtctgtcataatacaatagagacttcgagacagtagatctagctgttctgtcataatacaatagagacagtagatctagctggtctgtcatgatacaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctgatctgtcataatttaatagaggcagcagatctagctggtctgtcataataaaatagagacagcagatatagctggtctgtcataatataatagagacagtagatctagctggtctgttataatataaattagacagtagatctagctggtttgtcataatttaatagaggcagcagatctagcttgtctgtcatattataatagagacagtagatctagctgttctgtcataatataatatagacagtatatctagctggtctgccataaTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2493302 lncRNA downstream 26367 37351992 ~ 37356081 (-) True G2181230
TU2493249 lncRNA downstream 33034 37349179 ~ 37349414 (-) True G2181222
TU2493248 lncRNA downstream 33408 37348760 ~ 37349040 (-) True G2181221
TU2493243 lncRNA downstream 45953 37336264 ~ 37336495 (-) True G2181216
TU2493237 lncRNA downstream 55666 37326453 ~ 37326782 (-) True G2181210
TU2493261 lncRNA upstream 286 37421445 ~ 37424793 (-) False G2181223
TU2493255 lncRNA upstream 1734 37422893 ~ 37440531 (-) False G2181223
TU2493266 lncRNA upstream 1734 37422893 ~ 37462265 (-) False G2181223
TU2493289 lncRNA upstream 2254 37423413 ~ 37424793 (-) False G2181223
TU2493297 lncRNA upstream 8066 37429225 ~ 37434153 (-) True G2181225
LOC110509442 mRNA downstream 51274 37322673 ~ 37331174 (-) False LOC110509442
LOC118936394 mRNA downstream 63631 37317863 ~ 37318817 (-) True LOC118936394
NM_001124739.1 mRNA downstream 68286 37304199 ~ 37314162 (-) True LOC100136950
XM_036967496.1 mRNA downstream 85907 37284368 ~ 37296541 (-) True LOC110510188
XM_021591566.2 mRNA downstream 141285 37235305 ~ 37241163 (-) False LOC110510193
XM_036967585.1 mRNA upstream 70724 37491883 ~ 37498898 (-) False nsrp1
XM_036968211.1 mRNA upstream 131412 37552571 ~ 37559554 (-) False LOC118945348
XM_036968210.1 mRNA upstream 131412 37552571 ~ 37565815 (-) True LOC118945348
XM_036967346.1 mRNA upstream 209610 37630769 ~ 37655915 (-) False LOC110510233
XM_036967343.1 mRNA upstream 209610 37630769 ~ 37656552 (-) False LOC110510233
TU2493152 other downstream 142655 37234946 ~ 37239793 (-) False LOC110510193
TU2493155 other downstream 143109 37234793 ~ 37239339 (-) False LOC110510193
TU2493153 other downstream 143109 37234946 ~ 37239339 (-) True LOC110510193
TU2493150 other downstream 148549 37232869 ~ 37233899 (-) True G2181143
TU2492475 other downstream 399739 36981957 ~ 36982709 (-) True G2180587
TU2493346 other upstream 62489 37483648 ~ 37484650 (-) True nsrp1
TU2493402 other upstream 115506 37536665 ~ 37538240 (-) True G2181304
TU2493441 other upstream 359423 37780582 ~ 37787673 (-) True G2181315
TU2494085 other upstream 739518 38160677 ~ 38174302 (-) True LOC110509458
TU2494988 other upstream 1493447 38914606 ~ 38914926 (-) True G2182508

Expression Profile