RNA id: TU2493262


Basic Information

Item Value
RNA id TU2493262
length 1304
lncRNA type inter_gene
GC content 0.36
exon number 5
gene id G2181223
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37350766 ~ 37473048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atataatagagacagtaaatctagctggtatgtcataatacaatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcataatacaatagagacagtagatctagctggtctgtcataatgcaatagagacagtagatctagctggtctgtcataatataatagagacattagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatttaatagaggcagcagatctagctggtctgtcataatataatagagacagtagatctagctgttctgtcataatataatagagacagtagatctagctggtctgtaatagtacaatagagacagtagacctagctggtttgtcaaaaaataatagatacagtaaatctagctggtctgtcagaatacaatagagacagtacatctagctggtctgtcataataaaatagagacagcagatatagcttgtctgtcataatatagagacagtagatctagctggtctgtcataataaaatagagacagcagatatagcttgtctgtcataatatagagacagtagatccagctggtctgtcattatttaatagagacagcatatctatctggtatgtcataatataagagacagttgatctagctgttctgtcataatataatagagacagtagatctagttggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagatacagtatatctagctggtctgtcatggtataatagagacagtagatctagctggtctgtcataatacaatagagacagtagatctagctggtctgtcataatacaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtaataatataatagagacagtagatctagctggtctgtcataatttaatagagacagtagatctagctggtctgtcatagtacaatagagacagtagatctagctgttctgtcataatataatagagacagtagatctagctggtctgtcataatacattagagacagtagatctagctggtctgtcataatataatagagacagttgatctagctggtctgtcataatataatagagccagtagatctagctggtctgtcataattcaatagagacagtagatctagctggtctgccataatataatagagacagtagatctagctggtatgtcatgatttaatagagacagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2493302 lncRNA downstream 61484 37351992 ~ 37356081 (-) True G2181230
TU2493249 lncRNA downstream 68151 37349179 ~ 37349414 (-) True G2181222
TU2493248 lncRNA downstream 68525 37348760 ~ 37349040 (-) True G2181221
TU2493243 lncRNA downstream 81070 37336264 ~ 37336495 (-) True G2181216
TU2493237 lncRNA downstream 90783 37326453 ~ 37326782 (-) True G2181210
TU2493344 lncRNA upstream 13544 37481962 ~ 37491151 (-) True G2181265
TU2493358 lncRNA upstream 14419 37482837 ~ 37492441 (-) False nsrp1
TU2493350 lncRNA upstream 14550 37482968 ~ 37492441 (-) False nsrp1
TU2493359 lncRNA upstream 14550 37482968 ~ 37492441 (-) False nsrp1
TU2493378 lncRNA upstream 31373 37499791 ~ 37500700 (-) True G2181280
XM_036967880.1 mRNA downstream 10369 37404947 ~ 37407196 (-) True LOC110509383
XM_021591557.2 mRNA downstream 29318 37384321 ~ 37388247 (-) True LOC110510185
XM_021591558.2 mRNA downstream 29320 37384321 ~ 37388245 (-) False LOC110510185
LOC110509442 mRNA downstream 86391 37322673 ~ 37331174 (-) False LOC110509442
LOC118936394 mRNA downstream 98748 37317863 ~ 37318817 (-) True LOC118936394
XM_036967585.1 mRNA upstream 23465 37491883 ~ 37498898 (-) False nsrp1
XM_036968211.1 mRNA upstream 84153 37552571 ~ 37559554 (-) False LOC118945348
XM_036968210.1 mRNA upstream 84153 37552571 ~ 37565815 (-) True LOC118945348
XM_036967346.1 mRNA upstream 162351 37630769 ~ 37655915 (-) False LOC110510233
XM_036967343.1 mRNA upstream 162351 37630769 ~ 37656552 (-) False LOC110510233
TU2493152 other downstream 177772 37234946 ~ 37239793 (-) False LOC110510193
TU2493155 other downstream 178226 37234793 ~ 37239339 (-) False LOC110510193
TU2493153 other downstream 178226 37234946 ~ 37239339 (-) True LOC110510193
TU2493150 other downstream 183666 37232869 ~ 37233899 (-) True G2181143
TU2492475 other downstream 434856 36981957 ~ 36982709 (-) True G2180587
TU2493346 other upstream 15230 37483648 ~ 37484650 (-) True nsrp1
TU2493402 other upstream 68247 37536665 ~ 37538240 (-) True G2181304
TU2493441 other upstream 312164 37780582 ~ 37787673 (-) True G2181315
TU2494085 other upstream 692259 38160677 ~ 38174302 (-) True LOC110509458
TU2494988 other upstream 1446188 38914606 ~ 38914926 (-) True G2182508

Expression Profile