RNA id: TU2493441



Basic Information


Item Value
RNA id TU2493441
length 629
RNA type TUCP
GC content 0.54
exon number 2
gene id G2181315
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37780582 ~ 37787673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACGAAGATGGCGGACGAATTAGACCTCAGTGAACTAGACAGAGTACGGATTTCTGCTGCGGAGCTTCGAGTTGAAGCGTCGAGTTTCGTCAACCACGGCGATGTTCACAGAGaGGAGCAAGGAGAGGAGGGGCGTGGCGAATGCCAGCAGCAGAGTAACCACGGCAACGACGCATCAAAAAAATCCGATCTGCAATGCTGCACGTCCGAGGCCATCCATGGCAACCGTCACCATGACAGCAAGGAAGGCGAAGAGTTGACCTCCCCTCGTCACCCTGTAACCATGACTTCTGACCCTGAGGAGGAGCTGGTGATGTCACCACCGccacaggaggaggaagaaggacaCAAGATGGCCGCCACTGAGATGGTTTCAACGGAACCTGGATgtacagatggagagatggggacagaAGGAGAAGATAAATATGGAGGAGGTTTTACTTTTAACCGCGAAGGCTCTCGAGCATCTGCACAACAGAGGACTCAAAGAGGTGACCACCACACCAATAGAGtcgacaacaacaacagtagcaGTGCAGGGGGGCCATCGTGCTCAGGCAACGGACCACAGAGCTCCatacagagggatggagggagagagaaggaccagagagatggagggagag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2493435 lncRNA downstream 25631 37752396 ~ 37754951 (-) True LOC110510236
TU2493422 lncRNA downstream 109671 37665155 ~ 37670911 (-) False G2181312
TU2493412 lncRNA downstream 109671 37666217 ~ 37670911 (-) False G2181312
TU2493415 lncRNA downstream 109671 37666217 ~ 37670911 (-) False G2181312
TU2493417 lncRNA downstream 109671 37666217 ~ 37670911 (-) False G2181312
TU2493601 lncRNA upstream 5465 37793138 ~ 37793378 (-) True G2181418
TU2493603 lncRNA upstream 10131 37797804 ~ 37798046 (-) True G2181420
TU2493450 lncRNA upstream 34766 37822439 ~ 37824815 (-) False G2181319
TU2493452 lncRNA upstream 35864 37823537 ~ 37824815 (-) False G2181319
TU2493451 lncRNA upstream 36919 37824592 ~ 37824815 (-) True G2181319
XM_036967341.1 mRNA downstream 443 37751908 ~ 37780139 (-) False LOC110510236
XM_036967342.1 mRNA downstream 10831 37751908 ~ 37769751 (-) False LOC110510236
XM_021591624.2 mRNA downstream 43000 37729564 ~ 37737582 (-) True LOC110510235
XM_036967348.1 mRNA downstream 64327 37670709 ~ 37716255 (-) False LOC110510234
XM_036967349.1 mRNA downstream 64327 37670709 ~ 37716255 (-) True LOC110510234
XR_005040413.1 mRNA upstream 58374 37846047 ~ 37847952 (-) True LOC118945300
XM_036967940.1 mRNA upstream 372506 38160179 ~ 38237799 (-) False LOC110509458
XM_021590284.2 mRNA upstream 482220 38269893 ~ 38270880 (-) True LOC110509387
XM_021591630.2 mRNA upstream 509561 38297234 ~ 38298327 (-) True LOC110510241
XM_021591451.2 mRNA upstream 604864 38392537 ~ 38394321 (-) False LOC110510112
TU2493402 other downstream 242342 37536665 ~ 37538240 (-) True G2181304
TU2493346 other downstream 295932 37483648 ~ 37484650 (-) True nsrp1
TU2493152 other downstream 540789 37234946 ~ 37239793 (-) False LOC110510193
TU2493155 other downstream 541243 37234793 ~ 37239339 (-) False LOC110510193
TU2493153 other downstream 541243 37234946 ~ 37239339 (-) True LOC110510193
TU2494085 other upstream 373004 38160677 ~ 38174302 (-) True LOC110509458
TU2494988 other upstream 1126933 38914606 ~ 38914926 (-) True G2182508
TU2495250 other upstream 1171966 38959639 ~ 38960457 (-) True G2182749
TU2495799 other upstream 1571518 39359191 ~ 39370231 (-) True LOC110509389
TU2495859 other upstream 1761680 39549353 ~ 39549869 (-) True G2183255

Expression Profile