RNA id: TU2493883



Basic Information


Item Value
RNA id TU2493883
length 504
RNA type TUCP
GC content 0.46
exon number 2
gene id G2181669
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 38174056 ~ 38184872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aggagtcaatagaaatgtattttcacttgttttaacaaagttaacgGTAGATTTTTGGATATTAGGAAGGTATTAGGAAGGTGTggctaatgttttgtatacttagTGTATGTCTGTCCTTTATGTGTGTGAATGTCTgtccattatgtgtgtgtgtgtgtgggggggggggtggggggggtgttgTTGTACTCACAGACAGCATGACGCAGTATTTGTAGTTAGGGAATTGTTTGTCACACTTCTCACAGTGGTAGAGTCCATTTGGTTGTTCTATTACCTTCTTCTTACAATCTGCAGAGGGACAGGCCTGGTACAGACAGCTTTCCTTACCACTAAACAACACTGTGGCCACACAGCTGAAATAATCCGCctcgTCTCCTTgtcccagttgttcagtcttgaCGTCGCTGAGTGTTTTCCAGCAAGTGTTGGCTCCGCCTCCTGCAGGCCTCAATTCGGTCAGTGATTGGCCGTCCAGAGCATGACCTTCCTGAtcatacc

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU2493841 lncRNA upstream 64693 38109163 ~ 38109363 (+) True G2181630
TU2493840 lncRNA upstream 64922 38108736 ~ 38109134 (+) True G2181629
TU2493831 lncRNA upstream 78031 38095795 ~ 38096025 (+) True G2181620
TU2493684 lncRNA upstream 79721 38094109 ~ 38094335 (+) True G2181486
TU2493774 lncRNA upstream 151852 38020233 ~ 38022204 (+) True G2181570
TU2494203 lncRNA downstream 91841 38276713 ~ 38277490 (+) True G2181913
TU2494222 lncRNA downstream 120519 38305391 ~ 38305598 (+) True G2181932
TU2494124 lncRNA downstream 121897 38306769 ~ 38309446 (+) False G2181888
TU2494130 lncRNA downstream 121897 38306769 ~ 38378942 (+) False G2181888
TU2494133 lncRNA downstream 121897 38306769 ~ 38378942 (+) False G2181888
XM_021590342.2 mRNA upstream 81129 38085518 ~ 38092927 (+) True LOC110509457
XM_036968217.1 mRNA upstream 277942 37863719 ~ 37896114 (+) False LOC110510239
XM_036968216.1 mRNA upstream 277942 37865782 ~ 37896114 (+) False LOC110510239
XM_036968215.1 mRNA upstream 277942 37866474 ~ 37896114 (+) True LOC110510239
XM_021591626.2 mRNA upstream 320209 37847011 ~ 37853847 (+) False LOC110510237
XM_036967720.1 mRNA downstream 308930 38493802 ~ 38494808 (+) True LOC110509429
XM_036967894.1 mRNA downstream 317676 38502548 ~ 38507876 (+) True LOC110509430
XM_021590322.1 mRNA downstream 337511 38522383 ~ 38523768 (+) True LOC110509431
XM_036967929.1 mRNA downstream 349534 38534406 ~ 38540364 (+) True LOC110510114
XM_021590323.2 mRNA downstream 378739 38563611 ~ 38564582 (+) True LOC110509432
TU2492873 other upstream 468327 37705148 ~ 37705729 (+) True G2180928
TU2492841 other upstream 511841 37660587 ~ 37662215 (+) True G2180897
TU2492736 other upstream 752709 37417417 ~ 37421347 (+) False G2180811
TU2492253 other upstream 1131871 37041723 ~ 37042185 (+) True G2180382
TU2492249 other upstream 1191442 36982346 ~ 36982614 (+) True G2180378
TU2494668 other downstream 612685 38797557 ~ 38798979 (+) True LOC110509461
TU2495124 other downstream 893198 39078070 ~ 39213677 (+) True LOC110510244
TU2495216 other downstream 1024633 39209505 ~ 39210312 (+) True G2182716
TU2495655 other downstream 1375538 39560410 ~ 39563368 (+) False G2183108
TU2495671 other downstream 1568165 39753037 ~ 39777104 (+) False LOC110521967

Expression Profile


TU2493883 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.5.
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TU2493883 Expression in each Bioproject

Bar chart with 9 bars.
TU2493883 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.5.
End of interactive chart.