RNA id: TU2494299


Basic Information

Item Value
RNA id TU2494299
length 2186
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G2181976
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 38306668 ~ 38387483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catctactgtctctattatattatgacagaccaggaagATCTGCTGtcgctattaaattatgacagaccagctagatttactgtctctattatattatgacagaccagctagatctactgtctctattgtattatgacagaacagctagatctactgtctctagttatttattatattatgacagaccagctagatctactgtctctaggtctctattatattatgacagaccagctagatctactatctctattatattatgacagaccagctatatctgctgtatctgttatattatgacagaccagctagatttactgtctctattatattatgacagaccagctagatctactgtctctattgtattatgacagaacagctagatctactgtctctagttctttattatattatgacagaccagctagatctactgtctctaggtctctattatattatgacagaccagctagatctactatctctattatattatgacagaccagatatatctgctgtatctgttatattatgacagacctgctagatctactgtttctattatattatgacagaccagctagatctactgtctctattatatttgacagaccagctagatctactgcctctgttaaattatgacagaccagctagatctcctgtctctattatattatgacagaccagctatatctactgtctctattatactatgacagaccagctagatatactgtctctattatattatgaaagaccagctagatatactgtctctattatattgtgacagaccagctatatctgctgtatctgttatattatgacagaccagctagatctactgtctctattatatttgacagaccagctagatctactgtctctattgtattatgacagaacagcttgatctactgtctctaggtctctattatattatgacagacctgctagatctactgtctctattatattatgacagaccagctagatctactgcctctgttaaattatgacagaccagctagatctcctgtctcgattatattatgacagacccgtgagatatactgtctctattatattatgacagatcagctatatctgctgtctctattgtattatgacagaccagctagatctactgtctctgttatattatgacagaccagctagatctactgtctctattgtattatgacagaacagctagatctactgtctctataatattatgacagaccagctagatctgctgtctctattaaattatgacagaccagctagatgtactgtctctattatattatgacagaccagctatatctcctgtctctattatattatgaaagacctgctagatctacggtctctattatattatgacagaccagctagatctactctctctattatattatgacagaccagctagatctgctgtctctattaaattatgacagaccagctagatctactgtctctgttatattatgacagaccagctagatctactgtctctattgtattatgacagaacagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattataatatgacagacctgctagatctactgtctctattatagtatgacagaccagctagatctactgtctctattatattatgacagacgagctagatctgctgtctctattaaattatgacagaccagctagatctactatctctattatattatgacagaccagctagatctactgtctctaggtctctattataatatgacagacctgctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctgctgtctctattaaattatgacagaccagctagatctcctgtctctattatattatgacagaccagctagatctactgtctctattatactatgacagaccagctagatatactgtctctattatattatgacagacaagctagattgaagtagggttgaaatatgcttttctctctttgtttgctatggtgctatcctcagataatagcattgtttcaAAACAAGTGTAGttttaatttgctatctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2494089 lncRNA downstream 141678 38164603 ~ 38164990 (-) True G2181857
TU2494069 lncRNA downstream 162986 38143483 ~ 38143682 (-) True G2181842
TU2494064 lncRNA downstream 168935 38137523 ~ 38137733 (-) True G2181837
TU2494061 lncRNA downstream 172442 38134027 ~ 38134226 (-) True G2181834
TU2494058 lncRNA downstream 179485 38126835 ~ 38127183 (-) True G2181831
TU2494364 lncRNA upstream 2939 38389501 ~ 38389719 (-) True G2181985
TU2494367 lncRNA upstream 4702 38391264 ~ 38391591 (-) True G2181988
TU2494368 lncRNA upstream 5073 38391635 ~ 38391859 (-) True G2181989
TU2494369 lncRNA upstream 5512 38392074 ~ 38392382 (-) True G2181990
TU2494372 lncRNA upstream 6935 38393497 ~ 38393752 (-) True LOC110510112
XM_021591630.2 mRNA downstream 8341 38297234 ~ 38298327 (-) True LOC110510241
XM_021590284.2 mRNA downstream 35788 38269893 ~ 38270880 (-) True LOC110509387
XM_036967940.1 mRNA downstream 68869 38160179 ~ 38237799 (-) False LOC110509458
XR_005040413.1 mRNA downstream 458716 37846047 ~ 37847952 (-) True LOC118945300
XM_036967341.1 mRNA downstream 526529 37751908 ~ 37780139 (-) False LOC110510236
XM_021591451.2 mRNA upstream 5975 38392537 ~ 38394321 (-) False LOC110510112
XM_036967920.1 mRNA upstream 61769 38448331 ~ 38454568 (-) True LOC110510115
XM_021591452.2 mRNA upstream 76105 38462667 ~ 38463617 (-) True LOC110510113
XM_021590318.2 mRNA upstream 84135 38470697 ~ 38477145 (-) True LOC110509427
XM_021590319.2 mRNA upstream 96825 38483387 ~ 38484577 (-) True LOC110509428
TU2494085 other downstream 132366 38160677 ~ 38174302 (-) True LOC110509458
TU2493441 other downstream 518995 37780582 ~ 37787673 (-) True G2181315
TU2493402 other downstream 768428 37536665 ~ 37538240 (-) True G2181304
TU2493346 other downstream 822018 37483648 ~ 37484650 (-) True nsrp1
TU2493153 other downstream 1067329 37234946 ~ 37239339 (-) True LOC110510193
TU2494988 other upstream 528044 38914606 ~ 38914926 (-) True G2182508
TU2495250 other upstream 573077 38959639 ~ 38960457 (-) True G2182749
TU2495799 other upstream 972629 39359191 ~ 39370231 (-) True LOC110509389
TU2495859 other upstream 1162791 39549353 ~ 39549869 (-) True G2183255
TU2495890 other upstream 1206425 39592987 ~ 39594345 (-) True G2183279

Expression Profile