RNA id: TCONS_00005327


Basic Information

Item Value
RNA id TCONS_00005327
length 2867
RNA type mRNA
GC content 0.48
exon number 14
gene id XLOC_002881
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33305978 ~ 33343244 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTGTCTATATACAGAAAcatgtgttgtttattttattgtaaaaatgcaGTAGGGACTCTTATTTTGTATCGTCTGGTGACGACTCTGTAGGACTCCCGAACCTCAGTGCAAAGCTAATAATAATCCTCGAAATCAGCGGTGTGTCGCACACATCCACTCTCTTTCCGTTTCTCCTCTTCTTACACGCCCAGGAGGATGAACAAACCCGTTAGAGGACTTGATTATGGCACTTAATATTACTTTTTTGAAACTCTTTTCATTGTTTTCGGTGGCTCGGCTAATGTGATGGTAACGTGGCTCATCAACGCCGGGGGATTTTCAGGAACTTTTCACCTCGGGTGCTCCGGATCTAAGCTTTTATCATTTAGATATATCATTAAATTGCACATAGATGTCAACCATATGTGCAACATTtctaataacaaatatatattttaatagttcTAGGCTTTGTGTCCGATAAGGGACGATTTATCCGGTTAAAATCTCGCAGATTGATTCAATGACGCTACGTTTACTGTGATCTAGCTAACGCTAAACATGCTATTTGATCTGAAAGTAGGTTTGCAGATGCTATAATGTTACACATATCTCATTTAATATATCGTAGTTTGCATTAAAATAGATGTATCTGTCGTGCTGCTTGAAGTGAGATTTACGATCCGCAATCCACCGCTCGCATGTTTTCACCCACCCTCGGTGCGAACTTTCATTTTTGCTGTTTGTGGAGGTGTTTTAACAGCCGATAATTGTAGGAAGGAAAGTGTCGTTGTTGTGTTAGGATGCGGAAGGGTGAGGAGCAGAGCTGAGGGTAAACATGTTAAGGGTTTAAAGCATGTTAATGGCTCGGTGATCATGTCGTCAATGGAGGGTGTTTTCTCCTGGGTGGGAGACTGGCAGTGGCTCTTCATGGTCACTCTCTTTCTGGCCTCGGTTGTCACTTTGGTTGTATACTTGGTGCTGTATTTTTCCAACGAAGCTCATGATGGGAAAACGCATCTCAATCATGTGGATTCAGAGGAAGCTGATGGGATTTTATGTTGGGTGCTTTCCTTGAAAAACTGGAGGAGTCAGTGGAGAAGAGCCTGGTTTAGGAGCCTCAACGAGGAAGCTTGTAGATCACAGAGTGGGATTCAGCTGACCTTTGAAGATGATGGTGTCCAGTCATCAGAACTGGCTGTGGACCAGATTTCAAGCTTCACAAAAACACGGGGTCAAAAGaatgtTCTGTGTCAAGTGGTTGGAAACAAGCTGCAGTTTTCCCTCAGCGCTTTCCCGAGCTCGACGACTTCACAAACCCCCTTGAGATACAGTGTCAAAATTTCTCCACTTCATCTGCAGCTGGCCCTACAGATGAAAGAGGTGAACGGGGAGGTGGAGATTTCCTGGCGGGTGCTTCACCTGGACTCTGTAGATCTGCAGCTGATGCCAAGCTTTGCACAGGGAGATTGTCAGAGTCTAAGTGATGCTGCTGTGACCGACAGGCTCAGACAGGTCTTGAACGGAGCTCAAGCATCTGTAAGTTTGAGCAGCCGGCCCGCAGAATCTGCGGAAGTCAAGGAAGTAAGGAACAAGACCTTACAGGCGACCTCCCCGCCAAAGCCCCCACGAGCTCATGAATGGAAACTGTTAGTGAAGAATATCCGGGTCACATTCACACAGGAGGATGGTGCTGCAGGCGGCATGAATCCTCAATGTATCCTCCAGCTGGATGATCCGCCTCAGAAAATCAACAGTTCAGTGTTGAGTAACAAAAGCAACCCGACGTGGGACCAGCCCTTCATATTTGAGCTTAGCGGCCGGTCAAAGGAGCTGAACATCCAGGTCGTGGATAACGGCAAACCCGTGGAAAGTGGTTTGTTAGGGCAAGTTTCTGTGCCTTTTGATCTGGTGAGGAAACACCCTAAAGGTCAACAGACCTTTTCACTCAAGACCAAAGATCAAGTTACTGGATCAATAACTACTGAGTTCACCTATCTGGAGCCCAATGAGGTGCGTACCTGGCAGACACCCACCCCGGCCCCTACTAAAAGAGTGGAAATGGACCGCACTGTGATGCCCTGTGGCACTGTCGTCACCACTGTTACTGCCGTGAGGAGCAAACCAGGACGACCTTTACCACCCGAATCCAAATCGCCCTCTAAAAATAAGCTGGCAGAGAGAAGGGTGTCGGAGCAGCCGTCAATACTCGGTGCCAAAGTTAGTAAAGCTCTTTCATCGTCAGATACGGAGTTATTGATTCTGAACGGGACAGATCCTGTAGCCGAGGCTGCTATCAGACAGCTGCACGAGTCTGCAAAACAGAAGCTCAAATCTCCCGTCAAAAAGAGCACCATTATCATCTCAGGAGTGTCCAAGGCCCCTCTGTCCCAGGATGAAGAGATGTCACTAATGGCAGGGTATGCAGCGGCCATGGACGCTTCAATGTCCGGAGCAACCGAGGGCACCAACAGCGACCCCTTACCCCCCGAAAAAGTAGAAGAAAACAGCATTATCGAAGCCACAGAGTCCCTGGTGGGTGCAAATGGCACAGACCATGTGGAGGACTGGGAGAGCCAGACTGGAGAAGACCCGGATGCAGATAAAACATCTCTGTCCCTCTGTATCTCTGAAACGGGCTCTAAAAAAGGAAAAGGCAGCTTCCTTCACAAGAGTGCCAAGCTATTCTTCAGACGGAGGCATCAGCGAAAGGAGCCGGGCATGAGCCAGTCCCACAATGACCTCCAGTACCTGGAGCATCCCGAGGCGGCTGTGATGGGTGACAGGGAAAAGAGGACCGCCACCTTCAGGCGCATCATCAACCGCAAACTTCTCCCCAAGAGCAAGAGCAAAACCAACGGCATGCTGAAAGAACCGCCAACGTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000164191

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006084 lncRNA downstream 141405 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00006083 lncRNA downstream 409034 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006082 lncRNA downstream 525688 32779880 ~ 32780290 (-) True XLOC_002871
TCONS_00005772 lncRNA downstream 627733 32676810 ~ 32678245 (-) True XLOC_002870
TCONS_00006081 lncRNA downstream 714516 32584685 ~ 32591462 (-) True XLOC_002867
TCONS_00005338 lncRNA upstream 274380 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006085 lncRNA upstream 319921 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005339 lncRNA upstream 532887 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00006086 lncRNA upstream 853538 34196782 ~ 34198566 (-) True XLOC_002900
TCONS_00006087 lncRNA upstream 1409066 34752310 ~ 34772155 (-) False XLOC_002903
TCONS_00005326 mRNA downstream 8114 33269371 ~ 33297864 (-) True XLOC_002880
TCONS_00005325 mRNA downstream 40412 33253952 ~ 33265566 (-) True XLOC_002879
TCONS_00005324 mRNA downstream 54102 33240410 ~ 33251876 (-) True XLOC_002878
TCONS_00005323 mRNA downstream 149189 32903341 ~ 33156789 (-) False XLOC_002876
TCONS_00005328 mRNA upstream 24111 33367355 ~ 33379850 (-) True XLOC_002882
TCONS_00005332 mRNA upstream 201085 33544329 ~ 33557299 (-) True XLOC_002886
TCONS_00005333 mRNA upstream 218323 33561567 ~ 33572441 (-) True XLOC_002887
TCONS_00005334 mRNA upstream 237041 33580285 ~ 33588310 (-) False XLOC_002888
TCONS_00005335 mRNA upstream 237119 33580363 ~ 33588106 (-) True XLOC_002888
TCONS_00005308 other downstream 695209 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other downstream 695284 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005293 other downstream 2201224 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005286 other downstream 2774721 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005276 other downstream 3566870 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005329 other upstream 33574 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005330 other upstream 33757 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005331 other upstream 33886 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005343 other upstream 689039 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005358 other upstream 984018 34327262 ~ 34327394 (-) True XLOC_002902

Expression Profile

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