RNA id: TU2500870


Basic Information

Item Value
RNA id TU2500870
length 996
lncRNA type sense_over
GC content 0.40
exon number 4
gene id G2187178
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 44145250 ~ 44166347 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgcttaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccgtacagtgaaatgctgaatacaacaggagcagtagaccttacagtgaaatgctgaatacaacaagtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtagacctgacagtgaaatgctgaatacaacaggtgtagtgaaagacttacagtgaaatgctgaatacaacaggtgtagtgaaaggcttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgttgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgactacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtaatgctgaatacaacaggtgtaatgctgaatacaacaggtgtagtagaccttacagtgtaatgctgaatacaacaggtgtaatgctgaatacaacaggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2500856 lncRNA downstream 26617 44118000 ~ 44118633 (-) True G2187169
TU2500853 lncRNA downstream 31281 44112986 ~ 44113969 (-) True G2187166
TU2500825 lncRNA downstream 77073 44061700 ~ 44068177 (-) True G2187141
TU2500813 lncRNA downstream 82426 44049021 ~ 44062824 (-) True G2187136
TU2500795 lncRNA downstream 126240 44011160 ~ 44019010 (-) True G2187118
TU2500902 lncRNA upstream 10663 44177010 ~ 44196992 (-) True G2187195
TU2500916 lncRNA upstream 38153 44204500 ~ 44206602 (-) True G2187205
TU2500924 lncRNA upstream 53243 44219590 ~ 44220046 (-) True G2187213
TU2500925 lncRNA upstream 53824 44220171 ~ 44220986 (-) True G2187214
TU2500929 lncRNA upstream 56473 44222820 ~ 44223127 (-) True G2187217
XM_036968108.1 mRNA downstream 631772 43478190 ~ 43513478 (-) True map3k7cl
XM_036967729.1 mRNA downstream 675008 43450328 ~ 43470242 (-) True bach1b
XM_036968124.1 mRNA downstream 1369704 42749925 ~ 42775546 (-) False eva1c
XR_005040450.1 mRNA downstream 1404806 42734257 ~ 42740444 (-) True LOC118945309
XM_036968016.1 mRNA downstream 1538175 42579603 ~ 42607075 (-) False LOC110509472
XM_036967964.1 mRNA upstream 718090 44884437 ~ 44890751 (-) False LOC110509396
XM_036967401.1 mRNA upstream 928071 45094418 ~ 45113751 (-) False LOC110510296
XM_036967396.1 mRNA upstream 928071 45094418 ~ 45115615 (-) False LOC110510296
XM_036967395.1 mRNA upstream 928071 45094418 ~ 45115616 (-) False LOC110510296
XM_036967397.1 mRNA upstream 928071 45094418 ~ 45115616 (-) False LOC110510296
TU2500761 other downstream 214736 43929730 ~ 43930514 (-) True G2187085
TU2500253 other downstream 351603 43791868 ~ 43793647 (-) True G2186701
TU2500208 other downstream 418403 43725159 ~ 43726847 (-) True G2186662
TU2500172 other downstream 464659 43679952 ~ 43680591 (-) True G2186630
TU2500038 other downstream 608581 43532925 ~ 43536669 (-) False G2186529
TU2501022 other upstream 195251 44361598 ~ 44363487 (-) True G2187290
TU2501041 other upstream 224174 44390521 ~ 44390958 (-) True G2187307
TU2501411 other upstream 718092 44884439 ~ 44890425 (-) True LOC110509396
TU2502091 other upstream 953740 45120087 ~ 45131366 (-) True paxbp1
TU2502242 other upstream 1142939 45309286 ~ 45403361 (-) False G2188249

Expression Profile