RNA id: TU2501022


Basic Information

Item Value
RNA id TU2501022
length 1260
RNA type TUCP
GC content 0.40
exon number 2
gene id G2187290
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 44361598 ~ 44363487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaggagagagaggaaggagtgggagaaaagagagagagagagaaaggagagagaggaaggagatagaggaaggagagagagaaaagagagagagaaatagataaatTAAATGCATGAATACATTCCAACAATAAAGTAATTTTACATTTCCCTGTGAGAGCAGTAGGCTTGTCTGTAATTGCTATGCCCCCGCTTCGTctctatctatgtgtgtgtgagtctgtatgtgtgtgcgtgtgtgtgtgtgtgtgtgtcctcatggGTATGTATGTTTGTGCGCACTTGCGTAGGCGTGTGTGTTCCTGCATGCATACCTGTGATTGCATGCTCGTGCGTGCTGGCCTGTGTATGTGCATCTTTCTGCCTGTGTTTGAGAATTAACTCTATAACATTAAAGCCTTATTAAAGCCTGTATTAAAGCCTGTATTAAAGCCTGTATTAAATTCTGTATTAAAGCCTTATTAAAGCCTGTATTGAAGCCTTATTAAAGCCTTATTAAAGCCTGTATTAAAGCCCTATTGAAGCCTGTATTAAAGCCTTATTAAAGCCTTATTAAAGCCTGTATTAAAGCCTTATTAAAGCCTTATTAAAGCCCTATTAAAGGCTATTATTACCACTATAACGCGCCTGGTCCCTGATGAATATAAATGTGTTTATCATGTTGAAAAAGACGAGTGGAGAGCTTATGCTAATCAGGAACTGTGTGGGTGTTTTTACACCATTCAACTGGGTCTGGATGTGTGTTTTGCTCTAATCTATTATAGTGTAGCTCCATTTTGAAATAGCAAAGTGTCCCAAATTACATACTATTCCCTATCTACGTTGACCAGAGTCACCTATTCCCTATCTACGTTGACCACAGTCATCTATTCCCTATCTATGTTGTCCACAGTCATCTATTCCCTATCTACGTTGACCAGAGTCACCTATTCCTTATCTACGTTGACCAGAGTCATCTATTCCCTATCTACGTTGACCAGAGTCATCTATTCCCTATCTATGTTGACCACAGTCATCTATTCCCTATCTACGTTGACCACAGTCATCTATTCCCTATCTACGTTGACCAGAGTCATCTATTCCCTATCTACGTTGACCACAGTCATCTATTCCCTATCTACGTTGACCACAGTCATCTATTCCCTATCTACATTGACCAGAGTCATCTATTCCCTATCTACGTTGACCAGAGTCATCTATTCCCTATCTACATTGACCAGAGTCATCTATTCCATATCTACGTTGACCAGAGTCATCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2501020 lncRNA downstream 5310 44355872 ~ 44356288 (-) True G2187289
TU2501010 lncRNA downstream 26307 44334226 ~ 44335291 (-) True G2187280
TU2500945 lncRNA downstream 61756 44245569 ~ 44299842 (-) False G2187227
TU2500955 lncRNA downstream 104631 44256238 ~ 44256967 (-) True G2187234
TU2500936 lncRNA downstream 121649 44238480 ~ 44239949 (-) True G2187221
TU2501029 lncRNA upstream 14748 44378235 ~ 44379819 (-) True G2187296
TU2501030 lncRNA upstream 15011 44378498 ~ 44380379 (-) True G2187297
TU2501034 lncRNA upstream 19757 44383244 ~ 44383625 (-) True G2187301
TU2501058 lncRNA upstream 58012 44421499 ~ 44425192 (-) True G2187320
TU2501063 lncRNA upstream 68938 44432425 ~ 44432951 (-) True G2187324
XM_036967532.1 mRNA downstream 213365 43814629 ~ 44148233 (-) False cadm2a
XM_036967533.1 mRNA downstream 213401 43814629 ~ 44148197 (-) False cadm2a
XM_036968108.1 mRNA downstream 848120 43478190 ~ 43513478 (-) True map3k7cl
XM_036967729.1 mRNA downstream 891356 43450328 ~ 43470242 (-) True bach1b
XM_036968124.1 mRNA downstream 1586052 42749925 ~ 42775546 (-) False eva1c
XM_036967964.1 mRNA upstream 520950 44884437 ~ 44890751 (-) False LOC110509396
XM_036967401.1 mRNA upstream 730931 45094418 ~ 45113751 (-) False LOC110510296
XM_036967396.1 mRNA upstream 730931 45094418 ~ 45115615 (-) False LOC110510296
XM_036967395.1 mRNA upstream 730931 45094418 ~ 45115616 (-) False LOC110510296
XM_036967397.1 mRNA upstream 730931 45094418 ~ 45115616 (-) False LOC110510296
TU2500761 other downstream 431084 43929730 ~ 43930514 (-) True G2187085
TU2500253 other downstream 567951 43791868 ~ 43793647 (-) True G2186701
TU2500208 other downstream 634751 43725159 ~ 43726847 (-) True G2186662
TU2500172 other downstream 681007 43679952 ~ 43680591 (-) True G2186630
TU2500038 other downstream 824929 43532925 ~ 43536669 (-) False G2186529
TU2501041 other upstream 27034 44390521 ~ 44390958 (-) True G2187307
TU2501411 other upstream 520952 44884439 ~ 44890425 (-) True LOC110509396
TU2502091 other upstream 756600 45120087 ~ 45131366 (-) True paxbp1
TU2502242 other upstream 945799 45309286 ~ 45403361 (-) False G2188249
TU2502281 other upstream 1026655 45390142 ~ 45391144 (-) False G2188280

Expression Profile