RNA id: TU2502175


Basic Information

Item Value
RNA id TU2502175
length 476
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G2188187
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 45180107 ~ 45180582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcctgctgcctggcctgcaccctatttcattgtggagctagaggagttagagccctgtctatgttggtagataaaatgagagcacccctccagctaggatggagtccgtcactcctcagcaggtcaggcttggtcctgtttgtgggtgagtcccagaaagagggccaattatctacaaattatatcttttgggaggggcagaaaacagttttcaaccagcgattgagttgtgagactctgctgtagagctcatcactccccctaactgggagggggccagagacaattactcgatgccgacacatctttctagctgatttacacgcagaagctatgttgcgcttggtgatctctgactgtttcatcctaacatcgttggtgccgacgtggataacaatatctctatactctctacactcgccagttttagctttagccagcaccatcttcagattagccttaacgtcggtagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2502112 lncRNA downstream 26515 45152471 ~ 45153592 (-) True G2188134
TU2502163 lncRNA downstream 27828 45151793 ~ 45152279 (-) True G2188178
TU2502159 lncRNA downstream 37867 45141733 ~ 45142240 (-) True G2188174
TU2502117 lncRNA downstream 46802 45132531 ~ 45133305 (-) True G2188139
TU2502119 lncRNA downstream 68379 45109933 ~ 45111728 (-) True LOC118945272
TU2502189 lncRNA upstream 60219 45240801 ~ 45241966 (-) True G2188200
TU2502191 lncRNA upstream 62085 45242667 ~ 45243206 (-) True G2188202
TU2502193 lncRNA upstream 64243 45244825 ~ 45247768 (-) True G2188204
TU2502240 lncRNA upstream 128007 45308589 ~ 45310904 (-) True G2188248
TU2502243 lncRNA upstream 130384 45310966 ~ 45312777 (-) False G2188250
XM_036967392.1 mRNA downstream 4702 45120082 ~ 45175405 (-) False paxbp1
XM_036967393.1 mRNA downstream 4702 45126094 ~ 45175405 (-) False paxbp1
XM_036967399.1 mRNA downstream 64491 45094418 ~ 45115616 (-) False LOC110510296
XM_036967515.1 mRNA upstream 250654 45431236 ~ 45461687 (-) True stoml3b
XR_005040393.1 mRNA upstream 284168 45464750 ~ 45466196 (-) True LOC118945278
XM_036967252.1 mRNA upstream 286729 45467311 ~ 45495434 (-) False proser1
XM_036967251.1 mRNA upstream 286729 45467311 ~ 45495435 (-) True proser1
XM_036967596.1 mRNA upstream 487675 45668257 ~ 45689589 (-) True smpd1
TU2502091 other downstream 48741 45120087 ~ 45131366 (-) True paxbp1
TU2501411 other downstream 289682 44884439 ~ 44890425 (-) True LOC110509396
TU2501041 other downstream 789149 44390521 ~ 44390958 (-) True G2187307
TU2501022 other downstream 816620 44361598 ~ 44363487 (-) True G2187290
TU2500761 other downstream 1249593 43929730 ~ 43930514 (-) True G2187085
TU2502242 other upstream 128704 45309286 ~ 45403361 (-) False G2188249
TU2502281 other upstream 209560 45390142 ~ 45391144 (-) False G2188280
TU2502282 other upstream 209560 45390142 ~ 45391144 (-) True G2188280
TU2502289 other upstream 216894 45397476 ~ 45399546 (-) True G2188287
TU2502471 other upstream 563616 45744198 ~ 45748037 (-) True LOC118945350

Expression Profile