RNA id: TU2503178


Basic Information

Item Value
RNA id TU2503178
length 2868
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G2188941
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 46210991 ~ 46215343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtagcagtaacagcagtagtagtagtggcagtagtaacggtagtagtagtaacagtagtagtagtaccagtagtaccagtagttgTAGTACACCTTTAAGGTATGTTATTAAAGTAGTTGTCCAGTGTTTTCAGATTTCtttgaaatatgacctataactATCTACAATATGAGTGAAGTTTTCTTTCCAAAAATTGTACTTAAGTTTGATAAAAAGCAGTGTTTCTTTGTttgaatggtgtgggtttataccccaacaacagaatggtgtgggtttATACCGATCAATAAAGATTCATGTTCATGTCAAGCAAACAGACCATATTATATTTAAAAACTTTGCTAATAAAATAGATCAGTTGTTGTATCACTTGCAATATGCCCAAgctgagaaaaaaaaatatgtaaataatGATGTTTTTAATTTGACTGGACTGATGCTACCTGATAACTGGGCAGTTGCTTCAAAGTAACAGATTGAAACGTAATGTTATACTGGTTCTGATTCTCTAGAGTTGACTAACTAGATTTAGTGATCTGAATgtacatcattattattattgttaactAGTTACTATCAGGCTGCCTCCCAAGTGGCACCGTGTTCCCTATAGGAGGAAGCTACTTCTGACCAGGCCCCCATAGTGGGAGCCTCGTCAGTTGATGTAGACAAATACAACACTCAGGATGTGGTATGAACTTAGAACCAAAATACTCTACCTGCTCataccgtcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagcgacaTGTTATGTGATTCTCTGTGATTGGCTGACTACCTCGATGTGCTTCAGATCTGCATGTTGACAATACTGTTTTGTAAAATAAGTGACTCGTATTTTATATAGAAAGGGAACAATACTGGCGATTTGGCTTTTTTTTGTCATATCTTGTAATATGGCAAATTGTTCAACTTTGTTTGAAGCATGTTGTAATAtattaagaatatgaaatgtgcCAATAGGACAGCTTTGAAAATGTATTGGTTTTATTCTAATCTAATTCTACTCTTTTTCCATTTGGAAATGATTTTATATGTAGGcctacatatgtaggatcttaatttgatcaccctgttgcaggataactttccttaaaatgtgtaaattatttgaggttttaaaaaggcttcagaAGTTTGTGATTGCCACTtttaaatttcagacttgattttctccCTTACGAAAAAATGTATCACCCTAATTCAAAAATGtacatgaattataatccacataatcattcacgtttcctgttgctgcaggattaaaactgggtcaaattaagatcctgcatctgtagtTCGGACTTTGATAGCAATAGCCACAAATGCTACAGTATTTTTGGCCTACTGTGTATTACACATAGTCCTGGCATCTGTTCCAGGGTGGAGCAAACGGCTAGTTCAAACCTCCTCTCTCGTCCAGTGTTTCTGTTTACCAGAGCAGAGAGGACGTTTATTAGCCTGAGTGCCAGATGTGTTTGTTGCTGTCATGTTAGTTTGAAGGGTAAGCAGTGGAGTCGGCAAAGAGCACAAACTGATCCGGGACCAGGCTTACGTGTGGATATGCAGAATGTTCCAATAATCAATGATCGATGATAATCAATGATCGCTCTCATATCAACTCTGAGGACGTGTAcggaaacagaacatacaggatgTTTATATTCTAATTTCGATACTAATCAATATGTTATAACCAATAATCCGTATTGGATCTGAGTGATACCTGGTGGTCTTATCAATGTGTGCATGCTGATCTGTGCCAATAGCAGATAGTCTAGAAACTTGTTTGGATAATAACATGTCTGTAATCATTACTTTATAAAGTTTATTAGGGATCtcttctctctttatctatctctctgCCTTTCTGACAACAGACCTTTataacagggttccccaacttgtggcccgcgggtggttttatttggcccgcAGGTGGTTTTATTAGGCCTGGGGGTGGTTTTATTAGGCCagcgggtggttttatttggcccacGGGTGGTTTGATTAGGCCAGCGGGTGGTTTTATTAGGCCAGCGGGTGGTTTTATTAGGCCTGCGGGTGGTTTCATTTGGCCCgggggtggttttatttggcccgggggtggttttatttggcctgcgggtggttttatttggcctgcGGGTGTTTTTATTTGGCctgcgggtggttttatttggcctgtgggtggttttatttggcctgtgggtggttttatttggcccgcGGGAGGTTTTATTTGGCCtgtgggtggttttatttggcctgcgggtggttttatttggcctgcGGGTGTTTTTATTTGGCctgcgggtggttttatttggcctgcgggtggttttatttggcctgcGGGTGGTTTTATTTAAATTGTTGGACGTAAAAAAAAACAGCAGGAAATCAGATCCAAACGATTTTAATTtgagaaatctgttcccaagtattcccacgcataacagagagacagacatatgtGATCTCATACAAATGTAAGTAAGGTTTGAAAGGGTTTGTAATTACGTCGCTGCCCACCGACCAGCCTCTCCAGAAAACATCGGCCTACGGCTGAATCTATTTCATGATCCTTAGACTATAGAGTTGTGTTGTACCAGACAGTACCTTTGAATGTTTACTACAATACTGGTTGTTTCTATTAGTCTTTTTTATTAAAACTGAGGAGCGGATCATGTTATAGTTTTGTTTTAAGATTATTTCTGTCGTTTTTCTTACTGTTGAACTAATTGTGATATTTCAATGCACAACGCTTAATAAATATGGTTGAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2503161 lncRNA downstream 7797 46202026 ~ 46203194 (-) True G2188937
TU2503154 lncRNA downstream 31768 46173823 ~ 46179223 (-) False G2188931
TU2503155 lncRNA downstream 31768 46173823 ~ 46179223 (-) True G2188931
TU2503084 lncRNA downstream 46919 46161400 ~ 46164072 (-) True G2188870
TU2503148 lncRNA downstream 67774 46142729 ~ 46143217 (-) True G2188925
TU2503185 lncRNA upstream 9744 46225087 ~ 46228209 (-) True G2188944
TU2503203 lncRNA upstream 30606 46245949 ~ 46247416 (-) True G2188959
TU2503215 lncRNA upstream 55153 46270496 ~ 46271260 (-) True G2188970
TU2503219 lncRNA upstream 69202 46284545 ~ 46284997 (-) True G2188974
TU2503223 lncRNA upstream 81256 46296599 ~ 46298558 (-) True G2188978
XM_036967730.1 mRNA downstream 92923 45804868 ~ 46118068 (-) False LOC110510923
XM_036968183.1 mRNA downstream 430720 45768732 ~ 45780271 (-) True si:ch1073-15f19.2
XM_036968220.1 mRNA downstream 450420 45743616 ~ 45760571 (-) False LOC118945350
XM_036967596.1 mRNA downstream 521402 45668257 ~ 45689589 (-) True smpd1
XM_036967251.1 mRNA downstream 715556 45467311 ~ 45495435 (-) True proser1
XM_036967732.1 mRNA upstream 3220 46218563 ~ 46294863 (-) True grm5a
XM_036967918.1 mRNA upstream 109858 46325201 ~ 46353650 (-) True tmem135
XR_005040422.1 mRNA upstream 202650 46417993 ~ 46418609 (-) True LOC118945303
XM_036968046.1 mRNA upstream 352088 46567431 ~ 46568798 (-) True LOC118945322
XM_021591693.2 mRNA upstream 458568 46673911 ~ 46683741 (-) True si:dkey-175g6.2
TU2503081 other downstream 53185 46143319 ~ 46157806 (-) False G2188868
TU2503082 other downstream 53185 46156129 ~ 46157806 (-) True G2188868
TU2503091 other downstream 126207 46081386 ~ 46084784 (-) True G2188877
TU2502464 other downstream 406804 45802955 ~ 45804187 (-) True G2188420
TU2502471 other downstream 462954 45744198 ~ 45748037 (-) True LOC118945350
TU2503395 other upstream 418895 46634238 ~ 46636168 (-) False G2189115
TU2503400 other upstream 418895 46634238 ~ 46636168 (-) True G2189115
TU2503500 other upstream 554340 46769683 ~ 46769961 (-) True G2189204
TU2504417 other upstream 1027706 47243049 ~ 47270482 (-) False G2189814
TU2504421 other upstream 1027706 47243049 ~ 47270482 (-) False G2189814

Expression Profile