RNA id: TCONS_00005338


Basic Information

Item Value
RNA id TCONS_00005338
length 751
lncRNA type retained_intron
GC content 0.47
exon number 4
gene id XLOC_002889
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33614377 ~ 33621739 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCATTTGGAGGGCTACACAGCGGTCATTTGTCCTTATCCGTCCGCCATTGAATCCTCAATAGCATCTCAGGGTCAAACATTCAATCCTAGAGACGTGAGGAGAAAGGCAAATGTGAAATAAGTGTTCTGTCTGACTTTGTCTGGCTCGCCTCACCTGTTCCCGGCTGCTCGATTTATTAGGAAAGCATTAAGCACTCCTGTTGACAAAAACGTCCTTTTTATATCCTCCTCACAGGTGGCGGTGAAAATAATTGACAAGAAGAAGGCTAAAAAGGATTCATACGTCTTAAAGAACCTGCGGCGTGAAGGAAATATTCAGCAGATGATCCGGCACCCGCACATCGCCCAACTGCTGGACATAATGGAGACGGAAAACAGGTTCTACCTCGTCATGGAGCTCTGTCCTGGAGGAAACCTCATGAACTACATTTACGAGAACAAAAGATTGGAAGAAAGAGAAGCCAACAAATATGTCCGCCAGCTAGTGATGGCCGTGGAACACCTGCACAGAGCAGGAGTTGTTCACAGAGACTTGAAGATTGAAAATCTCCTTCTTGATGACCATGACAACCTAAAGCTGATCGATTTTGGCCTAAGTAACTCGGCGGGAATTCTGGGATACTCGGATCCCTTCAGCACACAGTGTGGCAGTCCAGCATATGCCGCCCCTGAGCTTCTCTCAAGAAAGAAATACGGCCCCAAAGTTGATGTTTGGTCAATAGGGGTGAACATGTACGCTATGCTGACTGG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-050309-240 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and protein phosphorylation. Predicted to act upstream of or within phosphorylation. Orthologous to human HUNK (hormonally up-regulated Neu-associated kinase).

Ensembl:

ensembl_id ENSDART00000136700

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006084 lncRNA downstream 453051 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00006083 lncRNA downstream 720680 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006082 lncRNA downstream 837334 32779880 ~ 32780290 (-) True XLOC_002871
TCONS_00005772 lncRNA downstream 939379 32676810 ~ 32678245 (-) True XLOC_002870
TCONS_00006081 lncRNA downstream 1026162 32584685 ~ 32591462 (-) True XLOC_002867
TCONS_00006085 lncRNA upstream 44223 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005339 lncRNA upstream 257189 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00006086 lncRNA upstream 577840 34196782 ~ 34198566 (-) True XLOC_002900
TCONS_00006087 lncRNA upstream 1133368 34752310 ~ 34772155 (-) False XLOC_002903
TCONS_00005364 lncRNA upstream 1148914 34767856 ~ 34772211 (-) False XLOC_002903
TCONS_00005334 mRNA downstream 29314 33580285 ~ 33588310 (-) False XLOC_002888
TCONS_00005335 mRNA downstream 29518 33580363 ~ 33588106 (-) True XLOC_002888
TCONS_00005333 mRNA downstream 45183 33561567 ~ 33572441 (-) True XLOC_002887
TCONS_00005332 mRNA downstream 60325 33544329 ~ 33557299 (-) True XLOC_002886
TCONS_00005328 mRNA downstream 237774 33367355 ~ 33379850 (-) True XLOC_002882
TCONS_00005340 mRNA upstream 380927 33999869 ~ 34002185 (-) True XLOC_002892
TCONS_00005341 mRNA upstream 402426 34021368 ~ 34033680 (-) False XLOC_002893
TCONS_00005342 mRNA upstream 405312 34024254 ~ 34033455 (-) False XLOC_002893
TCONS_00005344 mRNA upstream 424619 34043561 ~ 34046757 (-) True XLOC_002894
TCONS_00005345 mRNA upstream 440065 34059007 ~ 34067286 (-) True XLOC_002895
TCONS_00005331 other downstream 240410 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 240538 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005329 other downstream 240683 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005308 other downstream 1006855 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other downstream 1006930 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005343 other upstream 413341 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005358 other upstream 708320 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005381 other upstream 1365676 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005403 other upstream 1750895 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 2001391 35620333 ~ 35620449 (-) True XLOC_002922

Expression Profile

//