RNA id: TCONS_00006085


Basic Information

Item Value
RNA id TCONS_00006085
length 1625
lncRNA type intronic
GC content 0.33
exon number 1
gene id XLOC_002890
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33663165 ~ 33664789 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttaaactttaacacgATTTTGTGTTATGGGATACCCCTTGCTGTGTTGTATTTTGGAGTTCATTCTCTGGTGTTCAGAAACGTGCTTTAACTCCTTACTGGAGTTAAATTTTTAGAAAGTCCGCCATTACACAACTCTGCCGAGCAGCACATGAGAACTGGAGTTATGTTCTTCTTTGTGAGGTAGGTAAAAGTGCATTGTTATACAATTCTAAAAGCTTTTTCTAAATGTTGGATGTTTTGTAGCAGAGGTGTGTTTTGCTGTAGCTGTTTCATTTTGTACTGTGAGGCTAGTGACTGCATGTGGCTAACTTAGCATAGCATGTTAGCTTTTCCAATGTGGCTGTTTtgtgcagttttaaaaaaaaaatgttgtggatTTGAACAAGCTAACACTAGCTAATAATCTTTTCTTCCCCTGTGTTTCTGCTATGTGTTCTGCTGTCAAAAAGAAGTGGTAGGCCTACTTGATCAGATGGAGAAACCTGCTGTTCACATTTCAAATAGGCTAACTTACACAACGAGGTAATGTCAATATCTTTTATCCAGCAATAGAGCTTTATGTCTGTAAGATTTAATATGTGTAATATTGCTCATGAAATGTTTTGGATTGTATCATGATTTAGTCGTGACCGTGAGAGTATGCTGTTTTcagctatatttacattacattttcaatCACACTAACATAAGTTGTTAAAtaacatttatcttttttattttaggccACGATGCTGATAAAAGTGCAATTTGGAggcaagaaaaaatatattaaactggaAGAAGATTGTTTCTTGGATTTTTTCAGTGCGGGTGAGTTTTAGTgtaacagagtttttttttttaaattataataataataacagtcattttgaaatttatttgataaattataCATTGTTGTTATGTTGTAGTCCAGCACAAGTTTGTGATACCAGAGGATACAGCATCGAAAGTCACAGATGACCATGGCATAGAGGTGGATGAGGATGTATTTCAAGAACTTGCAACAACCAAAGAAACATGTCATCCACACTAATGATGGTAGgttatttaagatcatttttataaattttgaaaGTTGGTCTCATGACTCAAAGTGAAAGTGTGCATTTCAGAACCATTTACTGAcacgtgttgttgttgttttttcatcagATTTGACTGTCCTGCAGCAAGGGGCTGTTAAAGTGCCCTCCTACCCAAGTATGACAGATACATTGTCTGTGTCAAGCAGTTTGAGCAGCAGTGATTCTGGATCTCAAATTATTCAACCTTTAATGGGCAGTGtccaaaaaaatgtaagttttttttaaacttccaTATACATAGAAATTATACcgtaaacattacaaaataacGTTACAAAATGAATGCATTGTAAAGTAAAACATAGTATAAACACAGTtattagatttagttttttttgttaaaaaaatgttaattttggttATCtttctaaatacttttttttcttcgtttcagAAAATCGAGCAAATTCTAACTTCAAAGCCAGCAGAGTTGACTGTGATTGAGGAGtatgacaagatatttttttactgcttttGATTCCTgtgaagttaattttatataatgtaatgtgttgATTGTCTCATGCAATTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005338 lncRNA downstream 44223 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006084 lncRNA downstream 498592 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00006083 lncRNA downstream 766221 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006082 lncRNA downstream 882875 32779880 ~ 32780290 (-) True XLOC_002871
TCONS_00005772 lncRNA downstream 984920 32676810 ~ 32678245 (-) True XLOC_002870
TCONS_00005339 lncRNA upstream 211342 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00006086 lncRNA upstream 531993 34196782 ~ 34198566 (-) True XLOC_002900
TCONS_00006087 lncRNA upstream 1087521 34752310 ~ 34772155 (-) False XLOC_002903
TCONS_00005364 lncRNA upstream 1103067 34767856 ~ 34772211 (-) False XLOC_002903
TCONS_00006088 lncRNA upstream 1103187 34767976 ~ 34772211 (-) False XLOC_002903
TCONS_00005336 mRNA downstream 41426 33614377 ~ 33621739 (-) False XLOC_002889
TCONS_00005337 mRNA downstream 41426 33617491 ~ 33621739 (-) False XLOC_002889
TCONS_00005334 mRNA downstream 74855 33580285 ~ 33588310 (-) False XLOC_002888
TCONS_00005335 mRNA downstream 75059 33580363 ~ 33588106 (-) True XLOC_002888
TCONS_00005333 mRNA downstream 90724 33561567 ~ 33572441 (-) True XLOC_002887
TCONS_00005340 mRNA upstream 335080 33999869 ~ 34002185 (-) True XLOC_002892
TCONS_00005341 mRNA upstream 356579 34021368 ~ 34033680 (-) False XLOC_002893
TCONS_00005342 mRNA upstream 359465 34024254 ~ 34033455 (-) False XLOC_002893
TCONS_00005344 mRNA upstream 378772 34043561 ~ 34046757 (-) True XLOC_002894
TCONS_00005345 mRNA upstream 394218 34059007 ~ 34067286 (-) True XLOC_002895
TCONS_00005331 other downstream 285951 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 286079 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005329 other downstream 286224 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005308 other downstream 1052396 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005343 other upstream 367494 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005358 other upstream 662473 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005381 other upstream 1319829 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005403 other upstream 1705048 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 1955544 35620333 ~ 35620449 (-) True XLOC_002922

Expression Profile

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