RNA id: XM_036969200.1


Basic Information

Item Value
RNA id XM_036969200.1
length 1055
RNA type mRNA
GC content 0.51
exon number 9
gene id cfap161
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 363443 ~ 384257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTACAGTTACCGTGGAGACCACTCAACAAAGCTTGTCTAGTTGTTTTGGTTGGAGAGCTTGGCTAGCTAGAGGATAAATACTAGCCAGTTACCTAGCTAACTTACAATAAGTACACAAACATAACAAGCATCTGCACCACCATGGCTCACGTTAGGACATACAGACCAGACGTCCGTGTTGGAAACTGGAGGGAGGACGTTACATTGGAGGAGGACACACTGAAGGACTTCTTGgataggaaggagaggggagagctgATGGTGCAGAAAACTGGGTTCCTCAAACAAAACATCCTCAAACAGgttaaCCTGTCTGTTTCTGTGGGAGGTGCAGTGTGTTTTGGTGATGTTGTGATGCTGGTGAATGTGTGCGGAGACAACAGCTGCTCAGTCAGCATCTACGCTGACCTGACCAACGTGGGGGAGGGGCCTAGTCCAGCCATTCAGGCTCCCTGTGGGGTCAGTGGGGGGAGGAGTCTGCAGCCATGCACACGCAACGCATTCATCatcagcagtgtggatGGCAGTGCAGAGGGAGAGCCTCTGCGCTATAATCAGAGTTTCGCCCTCAGAACAACTAGTGGCTTTGCTGGAGGGttgTATCTGACGAGTGACCACAAGACCTTCCATAAGTGTGCCAAGAAGTCCCGCCTCCAGGAAGTGATCATGGAGCATCAGGCTAACTTCCTGTCCTGGTGGAAGGTTCTACACAATGACCCTCAGGAAAGACTGGAGCATGAGGGGCTGCCTGTTCCTGCCAACAGTAAAGTGCTCATCTCCCACTGCAAGACCAACCAGGCTCTGGCTGTTCTAGGACAACACATCCTGTGGACTCCGTATGGTAAAGAATATGAGGTGACAGCCCACACCTTCCTGGACTCCCATAAGGCCGAGCGAGACATCAACCATTGGCTGCTGCTGACCGCTGACCCTGCAGGGGCCGGGCTTACTCTACTGGACCACCCATAGACACACAATGgcacttaacacacacacacacaagggaatATTAAATTAAGTGGCACAGTCTCAATAAAGGTTTGATTCTGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2504768 lncRNA upstream 823 361816 ~ 362627 (+) True G2190050
TU2504821 lncRNA upstream 181468 170888 ~ 181982 (+) True G2190080
TU2504820 lncRNA upstream 210327 150510 ~ 153123 (+) True G2190079
TU2504818 lncRNA upstream 215474 143790 ~ 147976 (+) True G2190077
TU2504815 lncRNA upstream 247031 112657 ~ 116419 (+) True G2190074
TU2504949 lncRNA downstream 150564 534821 ~ 542502 (+) True G2190199
TU2504965 lncRNA downstream 174038 558295 ~ 558851 (+) True G2190209
TU2504968 lncRNA downstream 180217 564474 ~ 571140 (+) False G2190210
TU2504969 lncRNA downstream 182114 566371 ~ 571140 (+) True G2190210
TU2504972 lncRNA downstream 191933 576190 ~ 576618 (+) True G2190213
XM_036968555.1 mRNA upstream 4188 89318 ~ 359262 (+) True LOC110522685
trnat-ugu-41 mRNA upstream 284476 78903 ~ 78974 (+) True trnat-ugu-41
XR_005040872.1 mRNA downstream 101615 485872 ~ 550049 (+) False bnip2
XR_005040875.1 mRNA downstream 101615 485872 ~ 550050 (+) False bnip2
XR_005040871.1 mRNA downstream 101615 485872 ~ 550059 (+) False bnip2
XR_005040874.1 mRNA downstream 101615 485872 ~ 550059 (+) False bnip2
XR_005040873.1 mRNA downstream 101615 485872 ~ 553264 (+) False bnip2
TU2504769 other upstream 823 360931 ~ 362627 (+) False G2190050
TU2504955 other downstream 139277 523534 ~ 527466 (+) False G2190199
TU2505236 other downstream 225069 609326 ~ 616624 (+) False LOC110521136
TU2505239 other downstream 225069 609326 ~ 616624 (+) False LOC110521136
TU2505423 other downstream 498683 882940 ~ 884097 (+) False G2190529
TU2505851 other downstream 867409 1251666 ~ 1252289 (+) False G2190881

Expression Profile