RNA id: XR_005040871.1


Basic Information

Item Value
RNA id XR_005040871.1
length 2258
RNA type mRNA
GC content 0.47
exon number 11
gene id bnip2
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 485872 ~ 557208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTGGGAGAATGTGTCAGctctgagggggagagggggatgacgaCGTGTATCTTAATAACGGGGAGAGAAGACGGATTGGACTTTCAAACGACAAGAGATTCATTATGAACCGTCAGACATCAAAGTGTATCATGCTAAACATCTAACGGAAAGCGATTGAATGTGTTTGATTCGGTCTTCATGGCTCGTAAGACATCGTCAAAATCCACTTTATCTAAGTTGGCGCTGCTAAGGACAGTTGGCTAACTAGTTAGCATTGTGGTTAGCATTATCTTTTTGCTCAACGGAGGAAGGAAGGGGAACAGTTGACGCACTGCTCGGCTAGCGGGCTGTTAGCTAGTAACTTAGCTAACTTAGTTACGTTGTTTCTTTATACCTGACTCATTCAGTTTGACAACTAACTTCAAAGAAAATAATTGTGAATGTATgactttttttgttgtatttagCTACTACTAGAGCTATCAGCTAACAAACCAGCAAGATTATCATATTCATAAACGGTTGCTTTGGGGTTTGAATCATTTGATCCAGACCCTGTTGGAAAGGCAGCAGCAGATCAGCTGTGATGGCTACAGATATGATCGAGAGTGAGGTAGTGCTGAAGGCTGCGGGTGATAACGATATGAGTCTGAACAATAGCCCAGACCTAGACACACCCAGGATTTATGAGAGCCTGGGAGGAGATATCAGGGACACTCCGAGCCCTTCGTCTTCGGCAGTgtcaggaggagaagaggaagaagatttAGAAGACCTGCAAAACAGCAGCACAGAGCTTTCATTGGAAAATGGCGAAGAGGCCGCAGGAGCAGCGCTACAGAGGCCAACCCAAACAGGAGGTCCGGCGCAGGAAACGGTGACTCCAGACAATGGAGAAAAAcaggaggaaggggtggaggtGGTGCCATGCTCCACTCCCGTCAGAATGCCCCAGACATACTCAACCTCTGGACATAATGGAAGtctggagCGCCAGGAGTCTGTTGCAACCACAGAGGCTCGTCTCCGCATGGAGGGGGTGGAACTTAAAGAGGAGTGGCAGGACGAGGACTTCCCCAGgCCCCtacctgaggaggaagaggaggacattCAGCTGGGTGAAGATCTCTTCACTGGACCCTCTGGAGAAGGACAGTCTGctTCTGCAGGGGGCTATTCTGCTCTGAGTGGTGGTAAGAAGACTAAGAAGAAGCTGGCTGCCCCAGACATCAGCCTGACTCTGGATCGGAGTGAAGGATCTCTGCTGTCTGatgagctggaggaggagagtaCAGAGCTAGACCTGGATGATATAGACACACCATCTGACAACAGTAATGAGTTTGAATGGGAAGACGACCTGCCGAAGCCCAAGACCACGGAAGTTCTGCAGAAGGGGGTGGAGTCGGTCCAGGTGTACTCGGCCTCCGAGGAGCGGGAGGAGGGGCGGCGCTGGAGAGTGTTCCGTATAGGAGACCAGGAACACAAAGTCGACATGAAGGCAATAGAACCCTACAAGAGGGTCATCAACCACGGAGGTTACTATGGAGATGGCCTGAATGCCATCATAGTGTTTGCCGTGTGTTACATGCCTGAGAGCAACCAACCCAACTACCGCTACATCATGGACAACCTCTTCAAGTATGTGATCGGCACTTTGGAGCTCTTGGTAGCAGAGAACTATATGATAGTGTATCTGAACGGCGCCACGTCCAGGAAGAAGATGCCCAGTGTGGGCTGGCTCAGGAAGTGCTATCAGCAGATCGACCGCAGGTTAAGGAAGAATTTGAAGTCGTTGATTATCGTCCACCCCTCCTGGTTTATCCGCACCCTCCTGGCCCTCACCAAACCCTTTATAAGCTCAAAGTTCAGCCAGAAGATCCAATTTGTGTTCAACTTGACAGACCTTTCTGAACTGGTTCCTATGGAATACGTCTCTATTCCAGACTGCATTAAAGAGTAAGTCTATGTAGTTTCTCTGTAACAGACTGCATTAAAGAGTAGGTCTATGTAGTAtatctctataccagactgcattaaagagtaggtctatctctataccagactgcattaaagagtaggtctatgtagtatatctctataccagactgcattaaagagtagGTAtatctctataccagactgcattaaagagtagGTCTATGTAGTAtatctctataccagactgcattaaagagtaggtctatctctataccagactgcattaaagagtaggtctatgtagtatatctctataccagactgcattaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2504768 lncRNA upstream 123245 361816 ~ 362627 (+) True G2190050
TU2504821 lncRNA upstream 303890 170888 ~ 181982 (+) True G2190080
TU2504820 lncRNA upstream 332749 150510 ~ 153123 (+) True G2190079
TU2504818 lncRNA upstream 337896 143790 ~ 147976 (+) True G2190077
TU2504815 lncRNA upstream 369453 112657 ~ 116419 (+) True G2190074
TU2504965 lncRNA downstream 8236 558295 ~ 558851 (+) True G2190209
TU2504968 lncRNA downstream 14415 564474 ~ 571140 (+) False G2190210
TU2504969 lncRNA downstream 16312 566371 ~ 571140 (+) True G2190210
TU2504972 lncRNA downstream 26131 576190 ~ 576618 (+) True G2190213
TU2505253 lncRNA downstream 35399 585458 ~ 585668 (+) True G2190413
XM_036969200.1 mRNA upstream 101615 363450 ~ 384257 (+) True cfap161
XM_036969201.1 mRNA upstream 101618 363449 ~ 384254 (+) False cfap161
XM_036969199.1 mRNA upstream 108943 363443 ~ 376929 (+) False cfap161
XM_036969198.1 mRNA upstream 108943 363445 ~ 376929 (+) False cfap161
XM_036968555.1 mRNA upstream 126610 89318 ~ 359262 (+) True LOC110522685
XR_005040889.1 mRNA downstream 58507 608566 ~ 610267 (+) False LOC110521136
XM_036968645.1 mRNA downstream 144879 694938 ~ 782481 (+) True tbc1d2b
XM_036968769.1 mRNA downstream 239779 789838 ~ 835444 (+) False dapk2b
XR_005040880.1 mRNA downstream 239779 789838 ~ 835444 (+) True dapk2b
XM_036968558.1 mRNA downstream 458690 1008749 ~ 1028587 (+) True ca12
TU2504769 other upstream 123245 360931 ~ 362627 (+) False G2190050
TU2505236 other downstream 59267 609326 ~ 616624 (+) False LOC110521136
TU2505239 other downstream 59267 609326 ~ 616624 (+) False LOC110521136
TU2505423 other downstream 332881 882940 ~ 884097 (+) False G2190529
TU2505851 other downstream 701607 1251666 ~ 1252289 (+) False G2190881
TU2505853 other downstream 701607 1251666 ~ 1252951 (+) True G2190881

Expression Profile