RNA id: TU2505239


Basic Information

Item Value
RNA id TU2505239
length 6953
RNA type TUCP
GC content 0.44
exon number 2
gene id LOC110521136
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 608566 ~ 616624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacaggtgaactgtgaaatgcttacggcCCTTCCCAAAAATAATAGAAAAATGACGAGGAATAGTAAAATGACATAGCTGATCTTTCTGCCATCAGTCCacttttcagaataaaagccttactcctgctgCATCAGGTGTCCTACTTTCAATAGTCTACCACTTTTATCCAAGATGAATCTTCAAGGAGAtgatgtaatgttttattaaCTGATATCGGCCTCATAATAATGCGTATGCTGATATTTGACAACTGCAGCTATGAATCGTATAAAGTGAACCAGATTAATTTAATAAactttgttttaaaaaaaagaaggcATTCTTGAGAGGTTTTATTTGTGAAAGAATCAATCCATTTCAAGAGTGGGTGAAACGCCTGTGGTGAGACAGTAACATTACCTTCATAGAAAGCATACAGGTTCCTCTGGTGAGTCAGTTAAAGAAAGCATACAGGTTCCTCTGGTGAGTCAGTTAAAGAAAGCATACAGGTTCCTCTGGTGAGTCAGTTAAAGAAAGCGTACAGGTTCCTCTGGTGAGTTATGGACCTAAGTCAATAATTGAAATGCAACAAGTCTGTTTTCTGTGCCTCCTAGTATATCTCTCATGAACAGATCCATAcgaaataaaacaatacacacaacttACACTACACACGGAGAAAAAGAGTGCAGGTGTTATGTTAGATAGAAATGTAAACAGACCATCACTCTACCATTGTGGCAAGATGGAGTAGGTCTACACCTCCATCTAGTGGTCATGTCAGGGACAACATCTTTTGACAAGCTTTGTAACTAACTTatgttaaggttagggaaagAGTTATTTCCCCTGCCtcatacattctcctaacctgacCCTCAGTATAAAGATACAACAGACGTGTTGAATAGTATCTGGAGGAAAACAGCTGCGGATATGGCTCGGATGTACTGCCTAAAACATGACATTGCTGTGAAAGTAGGCATTTCAGTGCAGCGCTTGATAACAGTGGACTTTGAACTCTAATGAATAAGGCTTTTGTCAAACCCTGTCCTTCAGGAACTGAGTTTGACGTGATTTGTATACATAGATTCTAAAACCGATTAATTGAACAAACTAAACATTCAGTGCAGCATGAGTTTCTATATTCTACTGCTGCTGGCACTGCACGCCATGGCCTCCCCCCTCATCATCGTCAATATCCTCAAAGCTTGGCTTCCCTCCTCCACTGCTGCCGCTCTTCTGTTGAGAGTAGCTGCGATCCATCTCCTTCAGGTCTACCTCCTCCATGTCGTCTGAGATCAGCTGCTCGTCTCTGGGCGGGAGGAGGGCCTCCAGCTGGGGGAGGAGGTGCTCTGGCAGCCAGTGTTTATCTGGGAACTCCACCTGGTGGGGAGGAACATAGAGAAATGGGTTATGGGTCTGATAGGGTCTATTCCCTAtattacagtggcaagaaaaagtatgtgaaccttttggaaatacctggatttctgtatAAATTGGTCTTagaatttgatctgatcttcatctaggtcacaacaatagacaaacaccgtctgcttaaactaataacaacatgtattgtatttgtcttgtctatattgaattcATCATTTAAACaatcacagtgtaggttggaaaaagtatgtgaacctcgAGGCTAATGACTTATCCAAAAGCTAATTGTAGTCGGCTAACCTGGAGTctaatcaatgagacgagattggagatgttggttagggcCCATGCACcctatccctatatagtgctctacttatCTAGGGAAATAAGGAGGCATTTTAGATAACCTGATACAGGTTCTGCAGCATTGGAAGCCCCTGATCGAggctctgcagcattgaaagccATTGATACAGGCTCTGCAGCATTGAAAACCATTGATACAGGCTCTGCAGCACTGATAGAggctctgcagcattgaaagccATTGATACAGgctctgcagcattgaaagccATTGATAGAGGCTCTGCAGCACTGATAGAggctctgcagcattgaaagccATTGATACAggctctgcagcattgaaagccATTGATACAggctctgcagcattgaagtttcCCAAGAAGtgggcttccatcattcttaaatggatgaagtttggaaccaccaagactcctcctagagctggccaaccggccaaactgagcaatcgggggagaagagccttggtcagggaggtgaccaagaacatgatggtcactgacagagccccagagttcttctgtgaagatgggagaacattccagatggacaaccatcactgcagcactcaatcatactacaccagctccgacactcatcttatgtggcagggcctgcaaactattacagactacaaagggaagcacagccgcgagctgcccagtgaaacgagcctaccagacaagctaaatcactAATACACTCGcgttgaggcaagcaacactgaggcatgcatgagctgttccggacgactgtgtgatcaagctctccatagccgatgtgagtaagaccttgaaACAGGACAACATTCActaggccgcggggccagacggattaccaggacgtgtgctccgggcatgtgcggaccaactggcaggtgtcttcactgacattttcaacatgtccctgattgagtctgtaataccaacatgtttcaagcagaccaccatagccccTTTGCACAACActgaggtaacctgcctaaatgactacagacccgtaacactcacgtccgtagccatgaagtgctttgaaaggatggtcatggctcacatcaacaccattatcccaggaaccctagacccactccaatttgcataccccccaaacagatccacagatgatgcaatctctattctCCACACCGacctttcctacctggacaaaaggaacacatacgtgagaatgctattcattgaacgctgagttgtagtcaacaccatagtgccctcaaggctcatcactaagctaaggatcctgggactaaacgcctccctctgcaactggatcctggacttcgtgacgggccacccccaggtggtaagggtaggcaacaacacatctgccacgctgatcctcaacactggagcccctcaggggtgcgtacttctcctctcctgtactccctgttcacccacgactgcatggacaGGGACGACTCCAACACtaccattaagtttgcagacgacgcaacagtggtaggcctgatcaccgtcatttcacctgttgtatttggcgcatgtgacaaataaagtttgatttgatcaatcaggcctttatgatagagtggccagacagaagctactcctcagtaaaaaaggcacattacagcccgcttggagtttgccaaaaggcacctaaaggactctcagaaacaagattctctggtctgataaaaccaagattgaaccatTTAGCCTGAActccaagtgtcacatctggaggaaacctggcaccatccctacagtgaagtatggcggtggcagcatcatgctgtggggatgttttcagcagcagggactgggagactagtcaggatcgagggaaagatgaacggagcaaagtacagggagctccttgatgaaaacctgctccagaacaccCTGGACCTCAGAATTGGGCagaggttccccttccaacaggacaacaaccctaagcacacagccaagacaatgcaggagtggcttcgggacaagtctctgaatgtccttgagtggcccagccagtgcccggacttgaacctgatctcaTGTATTAGTTCAATCATACTGTGCAGCTATCTTTCATGTATTAGTTATATACTGTGTAGCCCTCTATCATGTACACTACATGGACTGAGATTTGTAAACGAAAGAGGAATAGAATCATATGAATTGAAAGGAGTTTCCAATCTCCCCACTTCTGGTGCAGCACAGACCTTATCCAGATGGTGGAACAAAGGCATTTCCTCACAGACCTGCTAACTTTCTTTGTTGTTACTTTTAAGGTTGGAACCAACATGCAGTGCCTCCAGCAGGAAGAGAGGCAAGAATAATGTGTCCATTAGCTCAatctacactattcacagccatGTCTAATGTTCAATGTAATTACATTGCTGGACTTTTTGAAACTTCATTTCAAACAGGTCTTCAAATCATGTTTTTTAGCTGTTAGTGATAATACATTTGTGTGTTTACATCACTAAGCCTTTATGTATGTGTTATAAATTATCAAAGGGGTCGGACTTTAaattgagggttagggttagggttagtctttATAGACTAAGTTTTACAGGACTCTGCATAGTGTCAAATAGGTTAACGttttttgtgttaaatgctctacaacagaTATTcccaatgccgtcgggggtatgcCAAATAGAAATCTGATTGACATTTTCAAAACAGTctttttatattttccaacggggctatgcATTTGGGTGAGGTTTCTTTCTcctgatctgtgagctgctctgacagctggtgcttaaagttagtgagggaggtaTGAGTctacagcttcagtgatttttgcagttcgttccagtcattggcagcagagaactggaaggaaaggcgaccaaagcaggaattggctttgggggtgaccagtgaaatatacctgctggagcgcgtgctacgggtgggtgttgctacggtgaccagtgagctgaaataaggcagggatttacctagcaaagacttaacgatgtcctggagccagtgggtttggcgacgaaaatgaaacgagggccagccaatgagagcatacagatcgcagtggtgggtagcatatggggctttggtgacaaaatggatggcaaagtgatagactgcatccaatttgctgagtagagtgttgaaggctattttgtaaatgacatcgccgaagtcgagaattggtaggtgtcatgacgttggcctgggggtaggtttatgaaaTACCTGCCCCCGCCTTTTcccctctctaccctactgatgtgacatttgaaaatcaTTTGCTTAACatagattctgggaacatcagaaggtggggggaaattaactatattctggtaatctgaccaattgaacatatgcggtgatccttaatgaatatgatgtcagttcagttgtcatctgagacattatcatcaatgataagatgacataaactctacaatggaaagtctacacatcagagttatcggattcacatggaattgttgttcaatttaaaatgTTTGAATGTGAAATAATTGGTGAAGATGAAATGTAAtgttagcttccaaatgagagatttgggtcttcataaggttagggctcaatcagtggcccgcccctgtgaagagacatgtgaatatttataatgctatttacccgccatgttgtggagtcagtatCGGCATGGCTTTTTTTGTTGTcggagcgccgtactcagattattgcatggtttcctttttccgtaaagtttttttttttaatctgacccagcggttgcattaaggagaagtatatctctaattccatgtataacacttgtatttttatctctatttctgctttttgtgactcctctctttggttggaaaatggctgtatgctttctgtgactaggtgctgaccaaacataatgatatgttgtgttttcgccgaaaagcctttttgaaaatcggacactgtggttggattaacgagaagtttatctttaaaatggtgtcaaatacttgtatgtttgatcaatttgaattatgagatttctgtttgaatttggcgccctgcaatttcactggctgttagcGAGGGGTTCCGCCATACCCAGACAGGTTAATGTGGCTGCTCTGCATGATGTATTGTCGTCTCTAccgtcttgccctttgtgctgttctgtgcccAATAATCtatgtaccatgttttgtgctgctaccatgcggtgttgtcttaggtctcgctttatgtagtgttgtcgctcttgtcatgatgtgtgctTTGCCCTAAATGtataatcccagcccccgtccctgcaggaggccttttgataggccgtcattgtaaataagaatttgctcttaactgacttgcctagttaaataaaaaaataaaaaaatttgcCGATTTATGAAGGTTCTCTGAGGAGCCAGATTACTGTAGGGTGTGCGAGGTATTTAAAAAGGGCTGATGGACCTACAaagcttgtttgtttgtttgtgtgtcagaaCCAAGATTATTTGGAGTAGTCCAACCGGAGTCAGTTTTGTTTTTAATGAAAACGTCTCGTCTCTAACCTAAACGGTTCAACctgacccgtctctctctctctctccaatggtAATATAATACTAACCTGGAATTGAATGATGAGCTGCCCTCTGTCGTAAGGGTCTTTGTGGATGGGCATGCCTTCATTATGGACACACCTCACATCGTTGGCCTTCACTACTTTACCTGGAAACAGAAAGATCACACGATCTTGgataaatttaccacaggtggactccaatccagttgtagaaacatctcaaggatgatcaatggaaacaggaagcaccggagctcaattttgagtctgaatatttattgaaagggtctgaatacaattttctttctttctaaaaaacggtttttgctttgtcattaagtgGTATTGCGTGTGGATTGATGAtgggaaaaaattatttaatcaattttagaataaggctgtaccattacaaaatgtacatttaaatCCAAGGGGGAGTGAATCCTTATAACAGCCACATTACCTGGTGAAGAGGTGATGATGAGCATCCTGCCATCTAGCGTACGGATGGTCTTCTTGAAGCCACAGAGGGCCTCAACCAGTTTGATGTTCATCTTCATGTGCAGGTCGTCCTCCTGCCTCTGGTACACTGGGTGGTCCTGCTGGTCCAGCACGATCACCACGTCACCTGGTTCCAGACCAGGCTCCTGGTCGCCCTCCCCGTGGAATGGTATCTTCTGACCCCCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2505247 lncRNA upstream 2536 606526 ~ 606790 (+) True G2190408
TU2505253 lncRNA upstream 23658 585458 ~ 585668 (+) True G2190413
TU2504972 lncRNA upstream 32708 576190 ~ 576618 (+) True G2190213
TU2504968 lncRNA upstream 38186 564474 ~ 571140 (+) False G2190210
TU2505262 lncRNA downstream 17071 633695 ~ 633963 (+) True G2190422
TU2505246 lncRNA downstream 18348 634972 ~ 637347 (+) True G2190407
TU2505266 lncRNA downstream 30876 647500 ~ 651492 (+) True G2190424
TU2505269 lncRNA downstream 33314 649938 ~ 650467 (+) True G2190426
TU2505283 lncRNA downstream 48893 665517 ~ 665828 (+) True G2190438
XM_036968714.1 mRNA upstream 52118 485873 ~ 557208 (+) True bnip2
XR_005040873.1 mRNA upstream 56062 485872 ~ 553264 (+) False bnip2
XR_005040871.1 mRNA upstream 59267 485872 ~ 550059 (+) False bnip2
XR_005040874.1 mRNA upstream 59267 485872 ~ 550059 (+) False bnip2
XR_005040875.1 mRNA upstream 59276 485872 ~ 550050 (+) False bnip2
XM_036968645.1 mRNA downstream 78314 694938 ~ 782481 (+) True tbc1d2b
XM_036968769.1 mRNA downstream 173214 789838 ~ 835444 (+) False dapk2b
XR_005040880.1 mRNA downstream 173214 789838 ~ 835444 (+) True dapk2b
XM_036968558.1 mRNA downstream 392125 1008749 ~ 1028587 (+) True ca12
XM_036968918.1 mRNA downstream 459330 1075954 ~ 1123473 (+) False man2c1
TU2504955 other upstream 81860 523534 ~ 527466 (+) False G2190199
TU2504769 other upstream 246699 360931 ~ 362627 (+) False G2190050
TU2505423 other downstream 266316 882940 ~ 884097 (+) False G2190529
TU2505851 other downstream 635042 1251666 ~ 1252289 (+) False G2190881
TU2505853 other downstream 635042 1251666 ~ 1252951 (+) True G2190881
TU2506051 other downstream 1064930 1681554 ~ 1682049 (+) True G2191047
TU2506803 other downstream 1630440 2247064 ~ 2247502 (+) True G2191616

Expression Profile