RNA id: XR_005040880.1


Basic Information

Item Value
RNA id XR_005040880.1
length 3064
RNA type mRNA
GC content 0.46
exon number 13
gene id dapk2b
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 789838 ~ 835444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgcttggAGGGGACAGTCACAGCACACTGAAAACACTGCAGTCAAGAGTCCCAGACAGGAGTAGTATGACTTACTACAGCAATAAGACCAGCTATTTACTTTGATATCATATAAGAACTGAACAGGCAATTCTCTCTCGTTGTGTCACTGAAGACAGAGTTACATGTTTATCGTTTACGAGGACGTATCGACCCTCAATGAGGACATTGGGCATGGCTGTTTTCAAGCAACAGAGAGTAGAGGACTTCTATGAGATTGGTGAAGAGCTGGGGAGTGGCCAGTTTGCCATCGTGAAGCGTGTCCGGGACAAGTGCTCGGGTCTGGAGTATGCTGCCAAGTTTGTGAAGAAGTGTCAGAGCCGGGCCAGCAGGAGGGGAGTGAGGAGggaagacatagagagagaggtggacatCCTACAGCTGATCACACATCCCAACATTGTAGCGTTGCATGATGTCTACGAGACCCGCACTGACGTGGTGCTCATACTGGAACTgGTGTCTGGAGGAGAGCTGTTTGACTTCCTGGCTCAGAAGGAGTCTCTGAGCGAAGAGGAGGCTACCCAGTTCATCAAACAGATCCTGAACGGAGTCCAGTTCCTCCATGGCAAGAGGATAGCACACTTTGACCTCAAGCCTGAGAACATCATGCTGTTGGATAAGAATGTTGATCTGCCGCGCATCAAGCTCATAGACTTTGGTCTGGCTCATAAGATGGATCAGGTCGGGACGGACTTTAAAAAGATCTTTGGGACACCTGAATTTGTGGCTCCAGAAGTCGTCAACTATGAGCCTCTGGGTTTAGAAGCAGACATGTGGAGCATCGGAGTCATCACCTACATACTttTGAGTGGAGCGTCGCCGTTCCTTGGTGACTCGAAGCAGGAGACTCTAGGGAACATCTCAGCCATAGCCTACGAGTTCGATGATGAGTTGTTCAGCAGGACCAGTGAGCTGGCCAAAAGCTTTATACGACAACTACTGGAGAAAGACAccagAAAACGGTTGACAATCCATGGTGCTCTGAACCATCCCTGGATACAGCCGATGGACTCCAGACAGGCCCTGGTAAAGAGACAGTCTGTGGTCAACCTGGAGAACTTCAGGAGACAATACGCCCGACGCAGGTGGAAGCTTTCCTTCAGAATTGTGTCTCTCTGTAACCATTTAACTCGTATGATGAAGAAAGGTCATCCCAAGCTGGCAGACCAGGACGAGAGGGACTGTGAGAGCGACCAGGAGACGGAGATGATCATGAAGAAAAGACCCAGAACCAGGAAGAGAAGCAACACTTCCTGAAACTTGCCTGTCTTTTCTGATTTGTTGAATGTGTGTCTGTAGCACACACGATTGGTCCAAAAGCAGTCACAGAGACTAATTCAAAAACTGCTGTCCATACAATGTCTTTTATATGTTGCACAGcattctaaaaacacattttctgggGCAATAGATGAAACACGTTGATAGTGTTTCCTAGATAGTGTGATTTCAGCGCCAACAGAAATGGTATTTGAATCCCTGCCTTCTGTAAAGCTATCTAGATTGTAGAAATGTACATGTGATAGGGGACAGGTTACAAGGTACAGGTTAGGATAGGGGACAGgatagggtacaggttagggtacaggttaggatagggtacaggttaggatagggtacaggttaggatagggtacaggttagggttacagtGGACAGGTTAGGGTTACAGGTTAGGATAGGGGACaagttagggtacaggttaggatAGGGTACAGGTTAGGATAGGGTACAGGTTAGGGTTACAGTGGACAGGTTAGGGTTACAGGGTAACGGTTAGGGTtacagggtacaggttagggttagggttagggttacagtggACAGGTTAGGGTTACAGTGGACAGGTTAGGGTTACAGTGGACAGGTTAGGGTTACAGTTGACAGGTTAGGGTTACAGGGTACAGATTAGGGTTACAGGGTACAGGTTAGGCTGCGGGTTAGGGTTACAGTTGACAGGTTAGGGTTACAGTGGACAGGTTAGGGTTACAGTGGACAGGTTAGGGTTACAGTGgacaggttagggttatggtggaCAGGTTAGGGTTACAGCgtacaggttagggttacagtggacaggttagggttagggttagggttacaatggacaggttagggttagggttgcagttgACAGGTTAGGGTATAtgttggggtacaggttaggTTTACAGTGGAAAGGAAGAGGACAGCTCACAGATAATTCAATGTTGTTATCTAATTGTCTTAAATAACCAACTTCCTCATTCTGCTATTGTCCTCATAATTGACTAACTTCCTCGCTCAGCTGTGGTCCTCATAAATGAACAACctcctcattctgctgttgtcctcattctgctgttgtcctcataagtgactaacttcctcattctgctgttgtcctcataagagactaacttcctcattctgctgttgtcctcattctgctgttgtcctcataagtgactaacttcctcattctgctgttgtcctcataAGTGACTAACTTCCTCATTCTGCTCTTGTCCTCATAAGTGACTAacttcctcattctgctgttgtcctcattctgctgtaGTCCTCATAAGTGACTAacttcctcattctgctgttgtcctcataagagactaacttcctcattctgctcttgtcctcattctgctgttgtaCTCATAAGAGACTAACTTCCTCATTATGCTGTTGTCCTCATAAGTGACTAacttcctcattctgctgttgtcctcataAGAGACTAACTTCttcattctgctgttgtcctcattctgctgttgttCTCATAAGTGACTAacttcctcattctgctgttgtcttcataAGTGACTAACTTCATCATTCTGCTcttgtcctcattctgctgttgtcctcataagtgactaacttcctcattctgctgttgtcctcataagtgactaacttcctcattctgctcttgtcctcataagagactaacttcctcattctgctcttgtcctcattctgctgtaGTCCTCATAAGAGACTAATTTCctaattctgctgt

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08803 DAPK; death-associated protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2505337 lncRNA upstream 862 788427 ~ 788976 (+) False G2190480
TU2505338 lncRNA upstream 862 788427 ~ 788976 (+) True G2190480
TU2505335 lncRNA upstream 1872 787517 ~ 787966 (+) False G2190479
TU2505336 lncRNA upstream 1872 787517 ~ 787966 (+) True G2190479
TU2505318 lncRNA upstream 64445 721512 ~ 725393 (+) True G2190465
TU2505383 lncRNA downstream 6670 842114 ~ 842518 (+) True G2190508
TU2505395 lncRNA downstream 18860 854304 ~ 855886 (+) False G2190515
TU2505396 lncRNA downstream 27827 863271 ~ 864263 (+) True G2190515
TU2505409 lncRNA downstream 37962 873406 ~ 874299 (+) False G2190524
TU2505411 lncRNA downstream 37962 873406 ~ 874299 (+) False G2190524
XM_036968645.1 mRNA upstream 7357 694938 ~ 782481 (+) True tbc1d2b
XR_005040889.1 mRNA upstream 179571 608566 ~ 610267 (+) False LOC110521136
XM_036968714.1 mRNA upstream 232630 485873 ~ 557208 (+) True bnip2
XR_005040873.1 mRNA upstream 236574 485872 ~ 553264 (+) False bnip2
XR_005040874.1 mRNA upstream 239779 485872 ~ 550059 (+) False bnip2
XM_036968558.1 mRNA downstream 173305 1008749 ~ 1028587 (+) True ca12
XM_036968918.1 mRNA downstream 240510 1075954 ~ 1123473 (+) False man2c1
XR_005040906.1 mRNA downstream 240510 1075954 ~ 1123835 (+) False man2c1
XR_005040903.1 mRNA downstream 240510 1075954 ~ 1123836 (+) False man2c1
XR_005040904.1 mRNA downstream 240510 1075954 ~ 1123836 (+) False man2c1
TU2505236 other upstream 173214 609326 ~ 616624 (+) False LOC110521136
TU2505239 other upstream 173214 609326 ~ 616624 (+) False LOC110521136
TU2504955 other upstream 262372 523534 ~ 527466 (+) False G2190199
TU2504769 other upstream 427211 360931 ~ 362627 (+) False G2190050
TU2505423 other downstream 47496 882940 ~ 884097 (+) False G2190529
TU2505851 other downstream 416222 1251666 ~ 1252289 (+) False G2190881
TU2505853 other downstream 416222 1251666 ~ 1252951 (+) True G2190881
TU2506051 other downstream 846110 1681554 ~ 1682049 (+) True G2191047
TU2506803 other downstream 1411620 2247064 ~ 2247502 (+) True G2191616

Expression Profile