RNA id: XM_036968542.1


Basic Information

Item Value
RNA id XM_036968542.1
length 2886
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC110510428
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 1725398 ~ 1755496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGTTTTTATTCGCCCCTAGTCATCCAACTGACGTGCGTCACGACGCCGCGTCTCTTTGTGCGCGGTTTCATCTAGCGGCGACATTTGTTGTTATTTTCACTACAACTGAAAAAAATACAAGACCGACCCGAccgtgtgtgttttgttgtttttttgttgctgttgttgttgtttggatCCATTCCATAACAAGCAAACTGACCCATTCCAAGCATCTACATCGGTTTGTCACATATTCTCGATTATTAACCGAGTAATGGACTCAGACGAAGGTTATAACTATGACTTCGACGAGGACGAATGTAGCGAAGACAGCGGCGCAGAGGAACCGGGGGAAGACACCCTGGAGTTAGGCGAGGACGAGGTGGAACTGGTCGATCCCGCCGAGGCCGGAGGGGAACGGGACGAAGGTTTGGAGACCGGGGGAAGTGGTCATGGGACCGGGCAAGAGGAAGAGGACTACCGCTTCGAAGTGCTCACTGCCGAGCAGATACTCCAGCATATGGTGGAGTGTATCAGGGAGGTCAACGAGGTCATCCAGAATCCTGCAACAATCACCAGGATCCTTCTGAGTCACTTCAACTGGGACAGAGAGAAGCTCATGGAAAGgTATTTTGACGGTAATGTGGATAAGCTGTTCTCAGAGTGCCACGTCATCAACCCCTGTAAGAAGTCGAGGACCAGACTGATGAGCACAAGATCCGCTGTTCAGGACCTGCCGTGTCAGATCTGCTATCTAAACTACCCAAACTCATATTTCACTGGCTTAGAGTGTGGACACAAGTTCTGTCTGCAGTGCTGGGGAGATTACCTGACAACCAAAATCATCGAGGAGGGGATGGGACAGACCATCTCCTGCCCTGCCCATAGTTGTGACATCTTAGTGGATGACAACACAGTCATGCGCCTCATAACAGACTCTAAAGTGAAGCTGAAGTACCAACATTTAATTACCAATAGTTTTGTAGAGTGCAATAGACTGTTGAAGTGGTGTCCCGCACCAGACTGCCACCACGTTGTTAAAGTCCAGTACCCCGACGCCAAGCCGGTCAGGTGCAAGTGTGGTCGACAGTTCTGCTTCAACTGTGGGGAGAACTGGCACGATCCTGTCAAGTGTAAGTGGCTGAGAAAGTGGATTAAAAAGTGTGACGATGACAGTGAAACATCCAACTGGATTGCAGCTAATACCAAGGAGTGTCCAAAGTGTCACGTGACCATTGAGAAGGACGGCGGCTGCAATCACATGGTGTGTCGGAACCAGAGCTGTAAAGCTGAGTTCTGTTGGGTCTGTCTGGGGCCCTGGGAGCCACACGGCTCAGCATGGTACAACTGCAACCGCTACAATGAAGACGATGCCAAGGCAGCCAGAGATGCACAGGAGCGCTCCAGAGCAATGTTACAGCGCTACCTGTTCTACTGCAACCGTTACATGAACCACATGCAGTCGCTGCGCTTCGAGCACAAGCTGTACGCCGGGGTCAAGGCCAAGATGGAGGAGatgcagcagcacaacatgtccTGGATCGAGGTGCAGTTCCTGAAGAAGGCCGTGGACGTGCTGTGTCAGTGTCGCTCCACTCTCATGTTCACCTACGTCTTCGCCTTCTACCTGAAGAAGAACAACCAGTCCATCATCTTTGAGAACAACCAGGCGGACCTGGAGAACTGCACAGAGACGTTGTCAGGATACCTGGAGAGGGACATCTCCCAGGATTCCTTGCAGGATATCAAGCAAAAAGTACAAGATAAATACAGATATTGTGAGAGCCGGCGGAGGGTGCTGCTACAACACGTTCATGAAGGCTATGAAAAGGACCAATGGGAGTACATAGAGGATTAAGAAGGACCAACGGGAGTACATTGGCCTCTCCTCATGGACCATCTCTAGAGAGAATATATTTTCTttgccccccctcctctctcctcatggaCCATCTCTAGAGAATATTTGTTCTTAGTCCTTGAGGAGAGGATATCTGTGTTCTGTAAGTgtttctctctactgtctctaccctCTCCACACCATCTCCGAATATCTCTACTCTAGAGAATAGAATATCTCTTTCTTCTACCTTCTGCACATCACCATGGACTCCTAGTTTAGAGAATATCTCCTGGGACACCACCCACCATTACATCCCTACTCACCTCCCTGGTTGAATGGAAACTTTCAAAGGAAATTTGTCAATAAGAGGTAGAATATTAAAACAGTGTTGTTAACAACAGTGTGAGAAGACTGACCATTCAAGAGTGGATCGATTTTTTCTGGTCCCAGTCCATCCCTCCTGGCCGGTGTTACTGAACTGCATCAGATTTCACATCGAAAATCAGCTAGAACAGCTGCTGCACATAGAGCTGTGACATCTAGAACAGCTGTTGCAGTTAAGTCTGAAGGTGACACCAAAGTGGCCATCGTTCAAAACcaatcctttttttttttgccccagtCGTTTTGGCAAATTTAGGACTCGTTCTCGCCCCCGAAATGCTTATGTGTTGAAACCATTATTAAGGAAGTATAATTAAAATGATATGTTTTGATTTTAATAAATGTCATTACTGGGAGTATTGTGTGAGTCAGTAGAATAGAACTCTCAACTGAAATTGTTTTATATGAATTACTTGAATATACAACAGGAGTGTCTCGGTGTGTATTTGCACTCTAGTATTCAAAATTCTGTTCACGGGTTcttcagaaatcctggttggaagattcccaCTATCGGGAGGGAATAAGCAGAAATCTGGGAgccctccaaccaggatttcgcGACCTTAATTTGCAGTGTGTTCAATCAGTCTAGAATGAGATCTCTAAAGCCTcgttcacactgcaggccttaatgctcaaataATGCTCAAATcagctagtttttttttttt

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11968 ARIH1; ariadne-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2506053 lncRNA upstream 16235 1707137 ~ 1709164 (+) False G2191048
TU2506054 lncRNA upstream 16235 1707137 ~ 1709164 (+) False G2191048
TU2506056 lncRNA upstream 16235 1707137 ~ 1709164 (+) False G2191048
TU2506058 lncRNA upstream 16235 1707137 ~ 1709164 (+) False G2191048
TU2506059 lncRNA upstream 16235 1707137 ~ 1709164 (+) False G2191048
TU2506033 lncRNA downstream 13572 1769068 ~ 1770257 (+) True G2191029
TU2506090 lncRNA downstream 15529 1771025 ~ 1773317 (+) False G2191066
TU2506091 lncRNA downstream 15529 1771025 ~ 1773317 (+) True G2191066
TU2506095 lncRNA downstream 27069 1782565 ~ 1783083 (+) True G2191070
TU2506097 lncRNA downstream 35042 1790538 ~ 1791100 (+) True G2191071
XM_021598571.2 mRNA upstream 440840 1279833 ~ 1284559 (+) True islr2
XM_036969371.1 mRNA upstream 484651 1167991 ~ 1240748 (+) True sema7a
XM_036968917.1 mRNA upstream 589155 1075954 ~ 1136244 (+) True man2c1
XR_005040904.1 mRNA upstream 601563 1075954 ~ 1123836 (+) False man2c1
XM_036968545.1 mRNA downstream 34100 1789596 ~ 1841114 (+) True hacd3
XM_036969491.1 mRNA downstream 223739 1979235 ~ 2008439 (+) True LOC118945831
XR_005040915.1 mRNA downstream 769197 2524693 ~ 2529356 (+) False LOC110521156
XR_005040914.1 mRNA downstream 769704 2525200 ~ 2529356 (+) False LOC110521156
XR_002473081.2 mRNA downstream 769706 2525202 ~ 2529356 (+) False LOC110521156
TU2506051 other upstream 43350 1681554 ~ 1682049 (+) True G2191047
TU2505853 other upstream 472448 1251666 ~ 1252951 (+) True G2190881
TU2505851 other upstream 473110 1251666 ~ 1252289 (+) False G2190881
TU2505423 other upstream 841302 882940 ~ 884097 (+) False G2190529
TU2505239 other upstream 1108775 609326 ~ 616624 (+) False LOC110521136
TU2506803 other downstream 491568 2247064 ~ 2247502 (+) True G2191616
TU2507289 other downstream 1004764 2760260 ~ 2762972 (+) True G2191994
TU2507357 other downstream 1137739 2893235 ~ 2909182 (+) True smad3b
TU2507374 other downstream 1167405 2922901 ~ 2924465 (+) True G2192059
TU2507365 other downstream 1284924 3040420 ~ 3052452 (+) True iqch

Expression Profile