RNA id: XR_002473081.2


Basic Information

Item Value
RNA id XR_002473081.2
length 1014
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110521156
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 2524693 ~ 2529356 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTACCAATGATGTCTGATTGTCCAGAGACAACAAACAAGGCCGTGATCCTGACACAAGGTGACATGTGTTGTGGACATGTTGTCAAGTCTGCAATGCACGCACACTTGCTAGGCATAGGAGTGAAAATTGGGCTTCCATAAAGTTGATGCAAACTTTAATACATTCAACAATATTGTGCAAGATGACAAGGAACAAACATTGATGGCTGTGACTggtgtgagctagctagctacagtgatCTTGAAATGTACCACAGAagaaccaagaaatgaagagcAACGCCACGGCTGACTTTTTTGAGCTTTTATGTAGATCTAAAATTATATTATGAAAAGAGAAGACCGGAAGATcatcagtctccaatgcaccatctgacaagttgttctaTAGAGGAGCGTGAggaaagTGTCGTCGGGAAACCCTCCAACCATATCAGGAGTAGAAGGCTGAGGCAGACCTTGGCAAGGCAACAGACGCATTTCAGATGGAGGATGGGAGAGATGGTTTGTCATGGAGTCCCCTGACTGACTAACAGACAGGTTGATACAGATGGAGTCCCCTGACTAACAGACAGGTTGATACAGATGGAGTCCCCTGACTAACAGACAGGTTGATACATATGGAGTCCCCTGACTAACAGACAGGTTGATACAGATGGAGTCCCCTGACTAACAGACAGGTTGATACAGATGGAGTCCCCTGACTGACTAACAGACAGGTTGATACAGATGGAGTCCCCTGACTAACAGACAGGTTGATACAGATGGAGTCCCCTGACTAACAGACAGGTTGATACAGATGGAGTCCCCTGACTAACAGACAGGTTGATACAGATTGAGTCCCCTGGCTGACTAGCAGACAGGTTGATACAGGAGAGATGGTTTGTCATGGAGTCCCCTGAAACAGATGTCTGAACTAGAGACCTTGCTCTCAGCATTACAATGATACTAGTACTTGTCATCATCTTCTGTTATTATTTAATTTaatggtagggggggggggggactaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2506865 lncRNA upstream 116551 2408375 ~ 2408651 (+) True G2191671
TU2506847 lncRNA upstream 195219 2329554 ~ 2329983 (+) True G2191653
TU2506821 lncRNA upstream 247769 2277234 ~ 2277433 (+) True G2191631
TU2506816 lncRNA upstream 269261 2255730 ~ 2255941 (+) True G2191626
TU2506804 lncRNA upstream 277039 2247877 ~ 2248163 (+) True G2191617
TU2506955 lncRNA downstream 40771 2570127 ~ 2570944 (+) True G2191739
TU2506932 lncRNA downstream 59856 2589212 ~ 2589629 (+) True G2191724
TU2506938 lncRNA downstream 63759 2593115 ~ 2594017 (+) True G2191725
TU2506967 lncRNA downstream 99652 2629008 ~ 2629646 (+) True G2191750
TU2506984 lncRNA downstream 103340 2632696 ~ 2633085 (+) False G2191761
XM_036969491.1 mRNA upstream 516763 1979235 ~ 2008439 (+) True LOC118945831
XM_036968545.1 mRNA upstream 684088 1789596 ~ 1841114 (+) True hacd3
XM_036968541.1 mRNA upstream 769706 1725398 ~ 1755496 (+) False LOC110510428
XM_036968830.1 mRNA downstream 6604 2535960 ~ 2575258 (+) False map2k1
XR_005040885.1 mRNA downstream 6604 2535960 ~ 2586498 (+) False map2k1
XM_036968829.1 mRNA downstream 6604 2535960 ~ 2587854 (+) True map2k1
XM_036968822.1 mRNA downstream 65086 2594442 ~ 2633145 (+) False zwilch
XM_036968824.1 mRNA downstream 65088 2594444 ~ 2623037 (+) False zwilch
TU2506803 other upstream 277700 2247064 ~ 2247502 (+) True G2191616
TU2506051 other upstream 843153 1681554 ~ 1682049 (+) True G2191047
TU2505853 other upstream 1272251 1251666 ~ 1252951 (+) True G2190881
TU2505851 other upstream 1272913 1251666 ~ 1252289 (+) False G2190881
TU2505423 other upstream 1641105 882940 ~ 884097 (+) False G2190529
TU2507289 other downstream 230904 2760260 ~ 2762972 (+) True G2191994
TU2507357 other downstream 363879 2893235 ~ 2909182 (+) True smad3b
TU2507374 other downstream 393545 2922901 ~ 2924465 (+) True G2192059
TU2507365 other downstream 511064 3040420 ~ 3052452 (+) True iqch
TU2507745 other downstream 1255151 3784507 ~ 3785708 (+) False LOC110521165

Expression Profile