RNA id: XM_036968828.1


Basic Information

Item Value
RNA id XM_036968828.1
length 2269
RNA type mRNA
GC content 0.51
exon number 2
gene id smad6b
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 2811893 ~ 2860702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtgtgtgtgttagagagcgagggagagaaaaagaagaagagagaaacggAGAAAGAACGAGATCTCAGCAGTTCAGTTTGACTTGTTAGCTAGGTAGTCAACCCGGAACGAGGAGAGAGGAGTACTCCGTTTGGGATTGATGATTATTTCTAGCTTCCAGCCTGGCATGGATATTTTTGGATTGTAAAAAGAAGTGCGGCTGTCGGGAGGTCGGGATCTGGATTTATAAAGGCTTTTAATGTATTTCTTTGGGATTTAAAATCACTTGTATAAAGGTGTAATTCATGTTGTTCTCTCCGTGCCGGGTTAGAAGAGAGGAGATGTGAAGGGGTGTTCGTTCCAAAGTCCGAAACTATTACGAGTGCGTAAAAGCGTTTTAGGGCTCCCTTTCTCTTCTGTCGTTGACTTTCCATATTGAATTCTGCATTGACTTAGTTCCCTTGTACCTATTGTCTACTCGCATGATATTATCATGTGTGTAAAACATTTGTTTATCCCTTCCGAGGCGTAGGGAACATTAAAAACTCGGGTCAAGAATAGGATTCAATTAGCAGTTCTGTATATTATTGACTACGTTCCCAGTATGAATGAATTTTGATTTCCCATGTCTCAATCTAATCTTGTTCTCCAATCGGCTGTGCATACCCTGGCACGGCGCTCCGACCAACATTAATGTCCTACAACTCAATTCAAAGTAGCTGGTAAACAGTCCCCTTTTGGTGACCCGAAACAAGAATAACCTAGAGAGAGAAAAGCAcatctatattttttaaattgtcgTATGTTCAGGACGAAACGCTCAGGTCTTGTGCGGCGACTCTGGAGAAGCCGTTTGATTCCACATAGTGACGAGGGAGATGGTGGACATAATGGCCCAAGTAGCGAAGACAGTCCAAGGGACGATCTCTTCACAACCTGCCACAACCCGGAGAAAATTAACAAAACGGATCTCCGACCGATGACGGTTGGCAGGTCGCCTGCAGGGGACTTAGGTGGAGTATGTGCCTTCAACTCGGCGGAGAGTTGCAGCGGCTGGGTGGGGGGCAGATCGGACCAACATGGGGGTGCTACGTCGGTGACTGTGTGCGTCCAAGGGCCGGGGCAGGAGCAGGGCAGCCCTCAGGCAGCGCAGGACAGCGAATGCAGGACGGTGACGTGTTGTTTATTTAAAGACCGGGACCACTGTGAAGTTGAACCCATTGCCCCGGGGAGGGAACCGTTACCAGACTCCTGTCATTTTGTTTTGAGGAACCACGGCGGTGGAGCTCGGGACAACGGTTCTCCTGAGTCGAAGCCGCGCACGGTGCTGGAGCAAGAACTAAAAACCGCCACATATTCTCTGTTGAAATGCTTAAAGGACAAAACCCTGGATACGTTACTGGAGGCGGTGGAGTCCAGAGAAGGGATGTGGAGCGACTGTGTGATGGTATCCCAGACAGAGATGCGTCTGGGCGGACACACGGCCATATCTCCGCCGCTGCTGCTGTGTAAACTCTACCGTTGGTCGGACCTCCAGCACACCGCCCAGCTCAAGCCGCTCTGTGAGTGCAGGAGCTTTGGGACTCTGGCTGGCCTCGCGGTATGCTGCAACCCCTATCACTACAGCCGGCTCTGCAGCGTAGatgcCAGTGTGTCCCCGGACGGATCCAAGCAGAGCCAGTGGTGTCACATGGCCTACTGGGAACACCGTGAGCGCGTGGGCCGTCTCTACCCGGTCTACCACACCTCCGTCTCTGTCTTCTACGATCTACCTCAGGGGACCGGCTTCTGTCTGGGCCAGCTCAGCCTCCACGATAACCATCAACCCTGTTCCACAGACCACCCCCGCTTCCGTACCGTCCAGCGCACACGCGCCAAGATCGGTTACGGTATCCTCCTCAGTAAAGAACCGGACGGGGTGTGGGCCTATAACCGGAGTCAACACCCCATCTTTGTGAATTCCCCCACCCTGGATGTTCCTGGGAGCAGGAGTCTGGTTGTGAGGAAGGTGATGTCAGGATATTCTATCAGGGtgtttgactgggagagatccaCCATGTTGAGGAGCTTGCAGCACGCTGACCCTATAGAGCTGCTAGAGGGCCCCTATGATCCTAACAGTGTGAGGATTAGCTTCGCTAAGGGATGGGGCCCCTGCTATTCCAGACAGTTTATTACATCATGCCCCTGCTGGCTGGAGATactgctcaacacacacacataatacagagagagaatgagagagagagagagaatgagagcaagagagagagagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2507290 lncRNA upstream 39698 2771906 ~ 2772195 (+) True G2191995
TU2507288 lncRNA upstream 52800 2758890 ~ 2759093 (+) True G2191993
TU2507282 lncRNA upstream 68092 2743481 ~ 2743801 (+) True G2191987
TU2507266 lncRNA upstream 91250 2720386 ~ 2720643 (+) True G2191972
TU2507259 lncRNA upstream 95375 2716268 ~ 2716518 (+) True G2191965
TU2507347 lncRNA downstream 13864 2874566 ~ 2874872 (+) True G2192047
TU2507349 lncRNA downstream 16481 2877183 ~ 2877665 (+) True G2192049
TU2507354 lncRNA downstream 58140 2918842 ~ 2920294 (+) False G2192054
TU2507355 lncRNA downstream 58140 2918842 ~ 2920294 (+) True G2192054
TU2507371 lncRNA downstream 62199 2922901 ~ 2924465 (+) False G2192059
XM_036968823.1 mRNA upstream 178609 2594448 ~ 2633284 (+) False zwilch
XM_036968821.1 mRNA upstream 178609 2594450 ~ 2633284 (+) True zwilch
XM_036968822.1 mRNA upstream 178748 2594442 ~ 2633145 (+) False zwilch
XM_036968824.1 mRNA upstream 188856 2594444 ~ 2623037 (+) False zwilch
XM_036968829.1 mRNA upstream 224039 2535960 ~ 2587854 (+) True map2k1
XM_036968631.1 mRNA downstream 32232 2892934 ~ 2915974 (+) False smad3b
XM_036968629.1 mRNA downstream 80391 2941093 ~ 3052608 (+) False iqch
XM_036968627.1 mRNA downstream 80392 2941094 ~ 3052608 (+) False iqch
XM_036968630.1 mRNA downstream 80393 2941095 ~ 3052608 (+) False iqch
XM_036968628.1 mRNA downstream 80394 2941096 ~ 3052608 (+) False iqch
TU2507289 other upstream 48921 2760260 ~ 2762972 (+) True G2191994
TU2506803 other upstream 564391 2247064 ~ 2247502 (+) True G2191616
TU2506051 other upstream 1129844 1681554 ~ 1682049 (+) True G2191047
TU2505853 other upstream 1558942 1251666 ~ 1252951 (+) True G2190881
TU2505851 other upstream 1559604 1251666 ~ 1252289 (+) False G2190881
TU2507357 other downstream 32533 2893235 ~ 2909182 (+) True smad3b
TU2507374 other downstream 62199 2922901 ~ 2924465 (+) True G2192059
TU2507365 other downstream 179718 3040420 ~ 3052452 (+) True iqch
TU2507745 other downstream 923805 3784507 ~ 3785708 (+) False LOC110521165
TU2507833 other downstream 1049402 3910104 ~ 3910366 (+) True G2192425

Expression Profile