RNA id: XM_036968627.1


Basic Information

Item Value
RNA id XM_036968627.1
length 3848
RNA type mRNA
GC content 0.56
exon number 23
gene id iqch
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 2941093 ~ 3052608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TaccttctcttttctcctctcccattcGCCCCACTTCGTGAACGTAGCGTCTCGTTGCCTTAGTTACAGCGTTTCGTCTGGGGCCAGGCAGAGGATGAGAAAGGGTTTGTTGACATGGGAAGTTGTCAACGCTTTCCACCACAATAAATAGCTAGCCAATTAGCCAATTAGCAAACCATTGCCGCATGTCACATGCAATGAGACTTTGATCCTTTGAAAGTGTTTTTACAGAAACTGTCAAATAAATGGCTGACATTCTTAATAAACACTCAGATGAGCTTGGAAACGTTTTAGTCCAGGTCCAGGATGATTTGAGACAGCTGAAGCGTAGCCTTGGCCGTATCACCTTCCACGAGAAGGGAGAAACCGTGGACCTCCAGGCCTTGGACGCTGCCATCCGCAGGACAGAGAGTGGGATCAGGAGGCGTGCAGAGCAGTATCAGAAGACAGTCAATAGGCAGGTACTGACACTTCCCAGCATTGAAGACCTAGAGAAGAAGACTGTACAGATTCCCAAATGGAGGCCCCCCCTGGGGAGTATCCCTGACATGCATCATCAGAGAGGTCAGAGTGTGGGGGCTTCACCCGGGGAGAAGcacAAGGCTGCGTTGGCCATGCGTCTGCTGTATAATCCCGTTCATCCAAAGAACAGGACTCTGATGCACCAAAACTATGGAATTCAGCTTCCTGATCTACGTAAGAGATCGGCTACGACAGGGCCCACTCAAAGGGTAGTGACTGGTCCCACGGTGGGCAGTCTGGCTATAGTGCCAGGAGGAGCATGCAACAACCTGTACCTGGTACCACCTCTGTCTGAAGAAGACATGACAGCAGGCATTGCCAGTCTACTGGAGAAGGGCTTAACCTCCTCAGCTAGAGATCTGTTCTGGACTGCTGTCCGCCCCACGGCTGCTCCGTTACACCGCAGGGAAGAGAGCTGCTCCTCCAAGATGGCCCCGCCAGAGAAAACATCGCAGGGTCAGAAGGAATTGATCTGGGGCAAGGATCCTGGCCCCTCCCACGGTCATGTGGGAGGGGCCAGAGAACGCCCGTCCACCTGGACCATCCACACCCCACCCGCCTCCGCCAACTCCAAGAGCTCCGAACACAGGCAAATGACCCAGGGAGCCGTCCGGCTTGCACCCCTCAACCCCCAGTGTCTCCCTGCTCTGGCTTCCATATCCATCAGTAAGTTGTCCTTCACCATCCTGGAGGGCCACATCAACCCTATGGCCCCAGACTTCTGCCGCTTCAAGCAGCACTACTGTCTGTGCTGGGGCCTGCTGGTGGAGCTGTTGTCGGGGCTGGGGAGTCTTCTGAGGCGCTATGCTGTCCCCGTGGCCAGGGTCGACGGAGAGAGGCTGGTACAGCTGGCACAGGGCGGGGATCTGGACTGGGCCGTAGGAGGAGGAGGCAGTAGCTCGGTGGAGCGTCTCCTCTCGGtgatagagaacagagaggaggttTGGGACCTGGTGCACCGACCAGGGCAGCGCTACCGGGGGGAGGGAGGCACGGAGGCTGCCGCGATACGGATCCAGAGCTGCTGGAGGCGCCACTGGGCCCGCAACGCCTACCTGCGCCACCGCCAGAGGAAGTGGGCGGCAGGGACCATCGCCATCTCCTGGCTGATGCACGCTCAACTGGGCCGCGTCAGGAAGATCCTGCAGGAGAGCAAGAGGACACACCTGGATAACTACCGCATCAGGGgccagTATCTGTCAGCCAACTGGAAACACATCCAGGCTTCCAGAAGGACCATCATACACATCCCATCATTAGGTTACTCCCAGTTGCAGCGTTTCAGCCTGAAGGGTTTCGACGTCCTGCAGAACATCCAGATGGGACGACTGTGTGATGTCAGAGatgaCAACGTGGAGGTGATCTATGTGTCTCCTGTGCGTCTGGGAGACGACCTGTCCCAGTATTACACCAGACTGCTGGCTTTGCAACAGAGAGGCCAGGGAGGACTCCAGGAGGCCACGGTAGACCCAGGGGACGGATGGGGAGGAGGGGCCAGGACAACCCAGGCCTCCTGCACCAAACGCTTCACCATCCTCACGCCTGACGCTCTGGAAGACTTTCCGACTCACAACATGTGTCTGTCCACGCTGTTGAAGTACAGCCCTCGAACCCTACGACGGATCCGTAACCTGATCCAGGGTCAGCAGGCCTACATGGTGGGTGGTGTGGCCCACGTAGATGACCTGGCGGTGGCCGATGAGCTGGGGGTACCCCTGCTGGGGCCAGAACCTGCTGTGGCCCGGCTCTACAGCACCAAGTCTGGAGGCAGGAGGATCTTTACTGGCGCAGGGGTCAACGTGCCCCCAGGACAGTGGGACATATACTCCTTACAACAgctCCATGAAACCCTCGCCAAGCTGATGACAAACCACATGGAGGTGAGGCGCTGGCTCTTCAAGATGGACTCTGAGATGGGTGGGCGGGGCACAGCATACTGCGATGTGTCTCACCTGAATTGCTCTACCTGGGCTCAGCAGGAGTACAGCCACCACAGTCCTGAACGCTGGAGGAAGGCCTGGGCTCAGGTAGGATGGAACACACACTATGACCTTTCACCTCACTATTATAACCACAGTCCTGAACGCTGGAGGAAGGCCTGGGCTCAGGTAGGATGGAACACACACTATGACCTTTCACCTCACTATTATAACCACAGTCCTGAACGCTGGAGGAAGGCCTGGGCTCAGgaGCCTGTTCTTATGAAGTACCTGGAGGAGGTTCCAGAGTGGTTGTCCCACTATGCCCAGCCTGTTAAGACCTCCTGTTACCCCACCTGGGCCTGTTTCCTGGACACCTTCCTTAGAcaaggtggtgtagtggagggataCCCTCCCTCAGACAgtgttacctgtctaacagtaGACCTGCTACTGCAGCCAGACGGGGAGGTCACTGTGCTGTCCTGTGGAGACCAGCTCCACGGCCCCAGTGAGTTGGAGACTGCAGGATCCTCAGTGCCTCAAACCTCTGTGTGTCCTGATGCCCTGCACACCCTCTGTCTCCGTGTGGGACATGCCTGTCTTCAACGCCACATCATCGGACATGTCTCTATGGACCTGGCCACATTCCTGGACCCTAGGACACTGGAGCAGCAGGTGTGGGCAGTGGACCTGGACCTGAGCTATAGTAACCAGTTGGCCATGACCCAGCTGATGCTCATGATGACGGGGGGAAGCCTGGACTGTCGGACCAGTCGTCTGGAGGTCCCCCTCACCAAGCCCTTCCTGCGCCAGAAAGGATCCAAAGAAACTGCTCTCCCAGCGGTGGCCAGTCGCTATGCTGTCCTGGGGAGCCGGCTGCTCCACACCAACCTGTCCATGGTGCACTATAGTGTCTTCTTCCAGATGTGCAAGGCTCAAGGCATCGGCTTCGACATCAAGGAAAAACAAGGCACGGTCTTTGTTCTCCATGACAGCTGTGAGCGAAACAGTCTGGGGATGGTAACCGTCGGTGACGACCTCCAGGGAGCCCTGATGACCTTCGCTCGTAACCTGTCCGTCATCCATCAGGAGATATCAGCTCCCAACATGCAGGGAGAGACTAACTTTAAGGACCTGATTAGAGACATAGAAGAGGTTTTGGGAATGAccgtccagaataaagcccaggtgaccgagggagaagagaggactgCTGCTGTCGCTGTCCGGACTAAACtggactgaccccccccccccccacacacacacacacacactactaggATGACTTAGTCACTTTAACGGAAGAAATGCGATCATTTCAAACCCTATTATCTATTTCTATATGTATTTCATAGAGTTTATCATACTTACTAGGGACAAATACATTATTCTATCCTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2507371 lncRNA upstream 16629 2922901 ~ 2924465 (+) False G2192059
TU2507354 lncRNA upstream 20800 2918842 ~ 2920294 (+) False G2192054
TU2507355 lncRNA upstream 20800 2918842 ~ 2920294 (+) True G2192054
TU2507349 lncRNA upstream 63429 2877183 ~ 2877665 (+) True G2192049
TU2507347 lncRNA upstream 66222 2874566 ~ 2874872 (+) True G2192047
TU2507430 lncRNA downstream 16737 3069345 ~ 3071805 (+) True G2192111
TU2507451 lncRNA downstream 81776 3134384 ~ 3135087 (+) True G2192132
TU2507467 lncRNA downstream 109887 3162495 ~ 3163081 (+) True G2192147
TU2507474 lncRNA downstream 117042 3169650 ~ 3170872 (+) True G2192154
TU2507483 lncRNA downstream 150510 3203118 ~ 3208107 (+) True G2192161
XM_036968631.1 mRNA upstream 25120 2892934 ~ 2915974 (+) False smad3b
XM_036968827.1 mRNA upstream 80392 2811895 ~ 2860702 (+) True smad6b
XM_036969279.1 mRNA downstream 203787 3256395 ~ 3270508 (+) False LOC110522690
XM_036969280.1 mRNA downstream 203787 3256395 ~ 3270508 (+) False LOC110522690
XM_036968561.1 mRNA downstream 217909 3270517 ~ 3271251 (+) True LOC118945764
XM_036969029.1 mRNA downstream 223833 3276441 ~ 3325034 (+) True LOC110521158
XM_036968665.1 mRNA downstream 413688 3466296 ~ 3562699 (+) False tle3a
TU2507374 other upstream 16629 2922901 ~ 2924465 (+) True G2192059
TU2507357 other upstream 31912 2893235 ~ 2909182 (+) True smad3b
TU2507289 other upstream 178122 2760260 ~ 2762972 (+) True G2191994
TU2506803 other upstream 693592 2247064 ~ 2247502 (+) True G2191616
TU2506051 other upstream 1259045 1681554 ~ 1682049 (+) True G2191047
TU2507745 other downstream 731899 3784507 ~ 3785708 (+) False LOC110521165
TU2507833 other downstream 857496 3910104 ~ 3910366 (+) True G2192425
TU2507856 other downstream 882419 3935027 ~ 3937099 (+) True LOC110521161
TU2508095 other downstream 1514143 4566751 ~ 4576024 (+) True LOC118945757
TU2509273 other downstream 1725092 4777700 ~ 4779264 (+) True G2193497

Expression Profile