RNA id: XM_036969279.1


Basic Information

Item Value
RNA id XM_036969279.1
length 2675
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC110522690
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 3256395 ~ 3270508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGCAATGGAGTGTAATCCTCGTCTGCTACCTGCGACACGGGACTCCAGCTCTTCTCCACCGAGCTCCAAACAGGACCTCCCAACATTCAACCCCAACCTGAAACCCAACCAGGTCAGCGAGACCGCCCTGTATGGAATACCCATAGTCTGCCTGGTGCTGGACGGTCAGGAGAGACTGTGCCTGGCGCAGATCTCCAACACTCTGCTGAAGAACTACAGCTATAACGAGATCCACAACCGGCGCGTGGCGCTGGGAATCACCTGCGTGCAATGCACCCCGGTCCAGCTGGAGATTCTGAGGCGTGCGGGCGCCATGCCCATCTCCTCGAGGCGCTGTGGGATGATTACAAAGCGCGAGGCCGAGAGGCTTTGTAAATCATTTCTTGGAGCTCACAACCCTCCAAAATTACCGGAAAACTTCGCGTTTGACGTGTCCCACGAGTGCGCGTGGGGGAGCCGTGGTAACTTTATACCAGCCAGGTACAACAGCTCCCGAGCCAAGTGCATCAAGTGCTCCTTCTGTAACATGTATTTTTCTCCCAATAAGTTCATATTCCACTCTCACCGCACACCAGAGTCAAAGTACACCCAGCCAGACGCGGCTAACTTTAACTCCTGGAGGAGACACCTCAAACTGACCGACAAGGGCTCACCTGACGACGTGGCACATGCATGGGAGGACGTGAAGGCCATGTTCAACGGGGGCAGCCGGAAGAGAACGATGCCCGTGCACGGTCACGGGTCTGAGCGTTCTTTTCCATTGAAATCACATCAAGGACCTAGCAACCTCTCCCGGAGAGACTCACCGGAGATCCCCCCTAAAATCCTCCGCTGCGAAGACAACCGAGGAGGCATGGGGAGTATGAGTACCACGCGCAGCTATCCGGTTATCCCGGTGCCCAGTAAGAGCTTCGGTATGCTGCAGAATGTGAAGATTCCTCCGCCGCTTTACCCACATCCCTACGGGTTCCCGACATTCGGGCTGTTCCAGAAAAAGAATGATAGTGGTGGTGTGATGGAAGGAGAGCAAAACAAAGCCCACCTCTCCGGGGTCTTCTCCTGGCCTAGCACCAAGGACAGCGCCTACCACTCTTTCCCCATGTTCTGGCCTACTGCAGGTGGCCTGACCATGCCCCCCTACCCCCACCCCCAGCCACAGCCACAGGCCCAGCACAAACCGCACTCGGAGCTCCTGTGCGCCCGACAGAGTGATCTGGACGCATCCGAGCAGAGTGACAGAAGTAGCAACACTCCGAGGGACAGTCTGATGGACAGTGACCAGTGCTCTAGCACACAGTCCACCCGGAATGAGGACGACAAGTTTGGCGATGAGGCGAGGCCAATGGACTGTATAAGGCCAGTTCTATCACGGAAGATTAGCTACGTCTCTGCATTCAGACCCGTCATCAAAGACGCGGAGAGTATTGCCAAACTTTACGGTAACCGGGGGTCGTACAACGGGGCTCGAGCTGGCTACCTGTCACCAGATTTCCTGAGCGAGAGCTCGAGTTACAGGTCCGTGTCCCCCGGAAGCGTGGACAGTGTGGGAGAGACGGATGTGGACGTTGAAACCAATAAATCACAAGAGGATGAGGAGTCACTTCCGCACAACATTGAGGGCAGCAAGAGCCCCCTTGTACCCTTTCTAAACTTGGCACAGGGTGCTTCACTAAACGGCCTAGAATCCAAATCGGAGCCGGAACAAGCGGCTGTGGTCGACTCACAGAGAATGAATCTACCTCTACACGTGGTACTACTgtcttcagacagagagagacaggagaacaagaccaCGTCTATTGTTGAAATATATTCACCGGACAGGAGTGATATGCAACAAAGGAGAAGTCCATATGCTTTTGGTTCAGCACCGAATTACCGTAAAGATACCGTGGAATCGAAAGACGACTGTGTCAGTAGAGAGGAGCCGTCTTCGACAATGGAGGAGGTTGAAACGAAGTCTTGTGACGGCCAAAGCGGCGAGGAGAGCCCGAGAGTAGCTCTGAATGAGGGCGAGGCAACGCACAATGTTAGCAGAGTATTACAAACTCAGAAAGACATAGAAAACCTGGCAAAAGACGAATTGCAGAGACAGCTCGTTGAGCAAGTGGAGCTAAGGAAGAAATTGGAACGAGAATTCCAACATTTAAAAAATAATTTCCATCATCAGATGAAAAGGGAGCTGTCCTACAGGGAAGAGATGGTTCAGCAGCTTCATATTGTCAGAGAAGCTCACAACGCGCTACAACATTTCTCCTGTAAGATGCTGACTCCTCGACACTGCACTGGAACCTGCTCCTTCAAACCTCCTCTTCTACCACCCTAGTCCCTTCCCACAGTCCACCGTGGAGCCCCATCCGTTTGGAAAGCAAGACTATACCACCCTAGTCCCTTCCCACAGTCTGCCGTGGAGCTCCGTCAGTCTGGAAAGCAAGGCTACTTCTACCCACAGGACTACCACCACCCCGAAGACTACTATCGCCCCAAAGACTACCGCCCCCAAGACTACTACCGCCCCCAAGACTACTAAACCCCCAAAGACTACTACCACCTCGAAGACTACTACCACCCAGAAGACTTCTACCACCCAGAAGACTACTACCGCCCCCAAGACTACTAAACCCCCAAAGACTACTACCACCCCCAAGACTACTACCACCCCCAAGACTACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2507490 lncRNA upstream 7555 3241085 ~ 3248840 (+) False G2192166
TU2507491 lncRNA upstream 7555 3244808 ~ 3248840 (+) True G2192166
TU2507483 lncRNA upstream 48288 3203118 ~ 3208107 (+) True G2192161
TU2507474 lncRNA upstream 85523 3169650 ~ 3170872 (+) True G2192154
TU2507467 lncRNA upstream 93314 3162495 ~ 3163081 (+) True G2192147
TU2507542 lncRNA downstream 37738 3308246 ~ 3308590 (+) True G2192203
TU2507544 lncRNA downstream 46074 3316582 ~ 3316921 (+) True G2192205
TU2507522 lncRNA downstream 54778 3325286 ~ 3332308 (+) False G2192186
TU2507524 lncRNA downstream 54778 3325286 ~ 3332308 (+) True G2192186
TU2507592 lncRNA downstream 194415 3464923 ~ 3465776 (+) True G2192245
XM_036968629.1 mRNA upstream 203787 2941093 ~ 3052608 (+) False iqch
XM_036968627.1 mRNA upstream 203787 2941094 ~ 3052608 (+) False iqch
XM_036968630.1 mRNA upstream 203787 2941095 ~ 3052608 (+) False iqch
XM_036968628.1 mRNA upstream 203787 2941096 ~ 3052608 (+) False iqch
XM_036968631.1 mRNA upstream 340421 2892934 ~ 2915974 (+) False smad3b
XM_036968561.1 mRNA downstream 9 3270517 ~ 3271251 (+) True LOC118945764
XM_036969029.1 mRNA downstream 5933 3276441 ~ 3325034 (+) True LOC110521158
XM_036968665.1 mRNA downstream 195788 3466296 ~ 3562699 (+) False tle3a
XM_036968660.1 mRNA downstream 195791 3466299 ~ 3565245 (+) False tle3a
XM_036968661.1 mRNA downstream 195791 3466299 ~ 3565245 (+) False tle3a
TU2507365 other upstream 203943 3040420 ~ 3052452 (+) True iqch
TU2507374 other upstream 331930 2922901 ~ 2924465 (+) True G2192059
TU2507357 other upstream 347213 2893235 ~ 2909182 (+) True smad3b
TU2507289 other upstream 493423 2760260 ~ 2762972 (+) True G2191994
TU2506803 other upstream 1008893 2247064 ~ 2247502 (+) True G2191616
TU2507745 other downstream 513999 3784507 ~ 3785708 (+) False LOC110521165
TU2507833 other downstream 639596 3910104 ~ 3910366 (+) True G2192425
TU2507856 other downstream 664519 3935027 ~ 3937099 (+) True LOC110521161
TU2508095 other downstream 1296243 4566751 ~ 4576024 (+) True LOC118945757
TU2509273 other downstream 1507192 4777700 ~ 4779264 (+) True G2193497

Expression Profile