RNA id: XM_036968511.1


Basic Information

Item Value
RNA id XM_036968511.1
length 2079
RNA type mRNA
GC content 0.57
exon number 10
gene id LOC118945757
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 4566366 ~ 4698448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTGTCTCTACCTGATCTACCTGATCTACCtacctctgtctcttctgtctctaccTGATCTACCTACCTCTGTCTCTTGTCTCTGCTCTCCTGTGACCTGGATAACTTATGCCTTCCCATTTAACACACCTCGCACAACTAATCAACTTTGCTTCCTTTACAATGTTGTTGCTtgatctctctacctctccttgtcctcttcctcttctcttcttcttgttcctgtctttttccacctcctcccgtctctctttgtctctgctgtgttgtctcctctctctctctccttcctagtGGGGAAGTGTCAGGGGGGCAGACAGGGGCATCGGTAGCGTTGGGGgggggaggggatggggagggtCCGGCGGGTCCCAGTGACAGTGTGAAGATGATGCCTGGCGGTACCAGCATGGCGATGTCGGGGGTCAAGGCCGGGAGGTGGCAGGCGGTCCAGAGCCACATGCAGGCGGGAGGACTCAGACCCACCAACTTTGGAGACTCAGTAGGTGCTCTGTCCTCTGCCTCCACCCTGGATCCCCTCCCCTCAGCTGGGCCGCTGGCCCGGCCACGCACCCTGCTACGTCAGCAGAGTCTCCAGCAGCCATTCATCCACCCACCTGCCCCAAGCCTCACCCAGCTCCCACCCACCTCCTCACAGAGCCTGGGAGAGCTATACCAGGTAACCCCGCCGGGGCACGGCCATCCTGGGGGAGGCGGGGGCAGTGAAGGAGGTGGGATAGGAGGTGGGGTAGGAGGTGGGGGCACTCGAGGAGGTCCCAGGAGGGTGCGAGGGAGCCCTGCAGGGGCAGGCACTTCACaatacagaggaggaggaggaggaggaggaggaggaggaggaagaggaggaggaggaaatccTGGCTCCTGGGATCACATGATGGGCCAGTTGAAAAACAGAGGCCTGGATGCCAAGTCCTTCCTCGAAGGGAAGATGGTGGTTCTTTCTTTGGCTATTGGTTTGGCAGAGCAAGATGACTTTGCCAATATCCCTGATCCAATCACCTCCATGCAGGAAGCTCCAACAGCCAATCAGGAAGCACTTCCTCCTCCAGACAAGAGgggcGTGTCCAACAAGCCAGGCAACAGTCCCAAGGGCCACCCCCCCGACGGACACTCCTCAGTCACCGATCTGGCCAACTCTCTCACCGGAGACATGGTCATGCTGTCCCCGGGCTCTGAGGATGACGACGGTGAAGGTCCTATCTGTGAGAAGCTGGGGCGGATCCAGTTCTCGGTTGGCTACAGCTTCCAGGACTCCACCCTGACCGTCAAGATTCTCAAGGGCCAGGAGCTCCCTGCCAAGGACTTCTCTGGGACCTCTGACCCCTTCGTCAAGCTCTACCTGCTGCCGGACAAGAAGCACAAGCTGGAGACCAAGGTGAAGAGGAAGAACCTCAACCCTCACTGGAACGAGACCTTCCTGTTCGAGGGTTTCCCGTATgagaaggtgagggagaggaCTCTGTACCTCCAGGTGTTGGACTTTGACCGATTCAGTCGTAACGACCCCATCGGGGAGGTATCCATCCCTCTCAACAAGCTCAGTGACCTGGGACACATGCAGACCTTCTGGAAGGAGCTCAAACCCTGCATGGACGGAGCGGGGAGGCGAGGGGACTTGCTGGTGTCTCTGTGCTATAACCCAACAGCCAACACCATCACTGTGAACATCATCAAAGCACGCAATCTCAAAGCCATGGACATAGGAGGAACATCAGaCCCCTATGTGAAGCTGTGGCTGATGCACAAGGACAAGCGTATTGAGAAGAAGAAGACAGTGACCATAAAGTGTTGTCTCAACCCCGTCTTCAATGAGTCTTTCCCCTTCGAGGTTCCGGCCCACGTCCTCCGGgagaccaccatcatcatcaccgtcATGGACAAGGACCGGCTCAGCCGCAATGACGTCATTGGCAAGatctaCCTATCTTGGAAGAGTGGTCCAGCGGAGGTGAAACACTGGAAGGACATGATGGGCCGGCCGCGTACTAATGTGGCCCAATGGCACGCTCTCAAGGCCTGATCGTCCCGCCTACCCCCTCTCCAGTGACCCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2508238 lncRNA upstream 31557 4534312 ~ 4534809 (+) False G2192695
TU2508240 lncRNA upstream 31557 4534312 ~ 4534809 (+) True G2192695
TU2508232 lncRNA upstream 46415 4519051 ~ 4519951 (+) True G2192690
TU2508167 lncRNA upstream 154018 4410569 ~ 4412348 (+) True G2192639
TU2508145 lncRNA upstream 159330 4380150 ~ 4407036 (+) True G2192619
TU2508076 lncRNA downstream 5769 4704217 ~ 4712150 (+) False LOC118945760
TU2508069 lncRNA downstream 8720 4707168 ~ 4712150 (+) False LOC118945760
TU2508072 lncRNA downstream 8720 4707168 ~ 4712150 (+) False LOC118945760
TU2508075 lncRNA downstream 8720 4707168 ~ 4712150 (+) False LOC118945760
TU2508078 lncRNA downstream 8720 4707168 ~ 4712150 (+) False LOC118945760
XM_036968532.1 mRNA upstream 33739 4378293 ~ 4532627 (+) True LOC118945758
XM_021598599.2 mRNA upstream 261132 4303164 ~ 4305234 (+) True LOC110521166
XR_002473084.2 mRNA upstream 322370 4240050 ~ 4243996 (+) False LOC110521171
XM_036968515.1 mRNA upstream 339336 4213595 ~ 4227030 (+) True LOC110521168
XM_036968512.1 mRNA upstream 341140 4213590 ~ 4225226 (+) False LOC110521168
XR_005040852.1 mRNA downstream 5654 4704102 ~ 4709389 (+) False LOC118945760
XM_036969204.1 mRNA downstream 149708 4848156 ~ 4869652 (+) True LOC110522695
XM_036969365.1 mRNA downstream 188170 4886618 ~ 4947425 (+) False LOC110521175
XM_036969366.1 mRNA downstream 188170 4886618 ~ 4947425 (+) False LOC110521175
XM_036969367.1 mRNA downstream 188171 4886619 ~ 4947425 (+) False LOC110521175
TU2507856 other upstream 629267 3935027 ~ 3937099 (+) True LOC110521161
TU2507833 other upstream 656000 3910104 ~ 3910366 (+) True G2192425
TU2507745 other upstream 780658 3784507 ~ 3785708 (+) False LOC110521165
TU2507365 other upstream 1513914 3040420 ~ 3052452 (+) True iqch
TU2507374 other upstream 1641901 2922901 ~ 2924465 (+) True G2192059
TU2509273 other downstream 79252 4777700 ~ 4779264 (+) True G2193497
TU2509359 other downstream 294954 4993402 ~ 4994620 (+) True LOC110521176
TU2509413 other downstream 407610 5106058 ~ 5108156 (+) True G2193611
TU2509427 other downstream 425065 5123513 ~ 5124709 (+) False G2193620
TU2509501 other downstream 500078 5198526 ~ 5200369 (+) True G2193655

Expression Profile