RNA id: XR_005040984.1


Basic Information

Item Value
RNA id XR_005040984.1
length 1502
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC118945824
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 10203094 ~ 10204823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCCTTATCCAATCCCACTGACCCCACTGTTGGGAACAGGCTGTCTGGACCCCTTTCAGAGAGCCAACAGGATATGAACCCAGTTCTACCGAGGGAGAAACCAACATCTTGACCATTACACCAAGAGAACATTCCTTATTGGACCGAGGGCCGACACTGATTTTGACGTCTCAGGCGGACTACCTCATCACATAACCTTGAGTAACCACGGCTGACCCATGTCCTCTATACATTCCTGTCACTTtctctcaattaaattacatttaattCAAAGGAGGGGGTGACGAGGGCCTCAGCCAGCCTCAGTAGGATGTACTGGGGAGCCAGCTGGATGCAGGCCATGGAGGACACCTGGAGCACCTTCCCTGACAGGGCCTGCTCCGTTAGAGGATAGCCCTTCCTGTGGACCTCAGACAGGCCCTCCACCAGGACAGACAGGCCCGCTACCAGGACAGACAGGGACGCACTCATGACCCAgtgctgggagaggagaggagaggagaggagacatggagagagacatggagagagacattaACATTGACTGAGTCATTGATGAGGATGATATTTGTTGttcatgtgtgtgcgtgcctgtgtgtgcgtgcttacTGATGACTCTGGCGGGGGAGAAGGGTGTTTTCTCCATGGACAGGTTGCAGGAGGTGACACACTCTACTTTATGGAGCAGAAATGAACATTAGATTTGCCTTTTTTTTTACTCACAACATCTGAAAAATGTGGTACTTGTACTTTCCACTGAAATGAAAAATGTAAATATCTCATGTGAAGCATGTCAGTGAAGAGGCCTGATGTTCTCCATTACATTGACCTGACTGAGTGATGCAGGCGCGGTACAGTATCTGCAAGCCGTACAGGGGGAAGAGCCTTGCCAGGACCTTGACGTTCTCCACGTGTGTCTCTTCAGAGAGTTCAGGAACACCCCAAAGTGGTCAACAGGGAACTGCCTGCACAACAAACACATCAATACTGGAATagaccacaacaaccacatcaaTACTAGAATagaccacaacaaccacatcaaTACTAGAATAGACCACATCAACCACATCAATACTAGACTAGACCACATCAATACTAGAATagaccacaacaaccacatcaaTACTAGAATagaccacaacaaccacatcaaTACTAGAATagaccacaacaaccacatcaaTACTAGAATagaccacaacaaccacatctaTACTAGAATagaccacaacaaccacatcaaTACTAGAATagaccacaacaaccacatctaTACTAGAATagaccacaacaaccacatcaaTACTAGAATAGACCACTTAAACCTAGGTATATACATACACTGTAACACAAAGGTGAAACATAGTCTGTGTGAAGTTGAGGTTGTGTTACCTTTTTTGGGCCTGAAGTTGAGGTTGTGTTACCTTTCTTGGGCCTGAAGGTGAGGTTGAGGTTGTGTTACCTTTCTTGGACCTCTAATGAGGTTGTTgtagaccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2515300 lncRNA upstream 83326 10076244 ~ 10119768 (+) True G2198255
TU2515299 lncRNA upstream 125256 10076244 ~ 10077838 (+) False G2198255
TU2515250 lncRNA upstream 182845 10014267 ~ 10020249 (+) True G2198212
TU2515224 lncRNA upstream 220693 9981375 ~ 9982401 (+) True G2198186
TU2515207 lncRNA upstream 240161 9962508 ~ 9962933 (+) True G2198170
TU2515407 lncRNA downstream 94626 10299449 ~ 10299953 (+) False LOC118945815
TU2515408 lncRNA downstream 94626 10299449 ~ 10300181 (+) False LOC118945815
TU2515409 lncRNA downstream 94998 10299821 ~ 10300677 (+) True LOC118945815
TU2515415 lncRNA downstream 106438 10311261 ~ 10363358 (+) True G2198363
TU2515492 lncRNA downstream 272532 10477355 ~ 10479163 (+) True G2198422
LOC118945768 mRNA upstream 612 10201736 ~ 10202482 (+) True LOC118945768
XR_005040985.1 mRNA upstream 18396 10184181 ~ 10184698 (+) True LOC118945825
XM_021598755.2 mRNA upstream 37828 10160959 ~ 10165266 (+) True LOC110521292
XM_021598752.2 mRNA upstream 51299 10142831 ~ 10151795 (+) True nucb2b
XR_005040983.1 mRNA upstream 163857 10012263 ~ 10039237 (+) True LOC118945823
XM_021598759.2 mRNA downstream 3420 10208243 ~ 10219657 (+) False LOC110521295
XM_036969437.1 mRNA downstream 3428 10208251 ~ 10247642 (+) False LOC110521295
XM_021598758.2 mRNA downstream 36481 10241304 ~ 10247642 (+) True LOC110521295
XM_036969329.1 mRNA downstream 55397 10260220 ~ 10265123 (+) False LOC110521299
XM_036969330.1 mRNA downstream 55470 10260293 ~ 10265123 (+) False LOC110521299
TU2514976 other upstream 582807 9619867 ~ 9620287 (+) True G2197955
TU2514689 other upstream 753441 9444364 ~ 9449653 (+) True calcb
TU2513860 other upstream 1607586 8593374 ~ 8595508 (+) True G2197055
TU2512716 other upstream 2110285 8084885 ~ 8092809 (+) True LOC110522717
TU2512578 other upstream 2487236 7715041 ~ 7715858 (+) False LOC110521236
TU2515291 other downstream 16827 10221650 ~ 10224117 (+) True G2198247
TU2515724 other downstream 663538 10868361 ~ 10877789 (+) False LOC110521306
TU2515932 other downstream 939390 11144213 ~ 11144672 (+) True G2198837
TU2517440 other downstream 1531651 11736474 ~ 11796618 (+) False LOC110521323
TU2517439 other downstream 1532279 11737102 ~ 11796935 (+) True LOC110521323

Expression Profile