RNA id: TU2515724


Basic Information

Item Value
RNA id TU2515724
length 2629
RNA type TUCP
GC content 0.39
exon number 2
gene id LOC110521306
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 10799756 ~ 10920504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTATTTGATGGTATTTTTATCATAGACTAGTGTTGAGTGACATTTGTTTGGTCGAGATTTACACAAACTCTCTCACAATGTGTGCTGGATTGCACAAGTCAGTCAATGTCAATATTTGAAGACACTCTAGTGTCTTTTGTTCCTCAAACCCCCTTTCTTGCACACACAGAGCCCGCAATCATCAGAAACCTCATGTCCACTGAAATCACAACATCATCTGTGTTTCTGAACTGGACTGAACCATTCGGAAACAGATCCTTCTACAGAGTAGAATGGACTGATAGCAATACCAGTGGCAGTCAGAATACCCCAGAAACCTCTTTTAATGTTACTGCTCTCACTGCTGGAGTGCAGTACTTCTTCACAGTCACTGCAGTGGCTGGAGATAACACAACTGTAGGACAGAGCAAGACAGTTTCTAAGTATACAAGTAAGTAACTCAGATACTTTAGTGTTGGATTGTTTCAATGCCACAGATACTATTCATATTTATTGATACATTAGTTGTTTTGATCCAAGAACATGATGATTTGAAAGTTGCCTTGTCTATGTAGAATGAATTGATGGCAGTAGAGATATGAATGAAACTACCAATGAGGCGCCTTTAACTTAACTGAGCTGACTGCTGGAGTGAAGTACACATTCAGGGTGCTTGCAATTAATGGGGATGAGATGACTGAAGGCAATATTTGATATTATTGAGTTGCGGAACTCTTGGTGTTAACGGACATTTTTCATGTCTAGAGGCTGATCCATCCCTCTGGGTTGTGTATATTAGAGGCTGATCCATCCCTCTGGGAAGTGTATATTAGAGGCTGATCCATCCCTCTGGGTAGTGTATATTAGAGGCTGATCCATCCCTCTGGGTAGTGGATATTAGAGGCTGATCCATACCTCTGGGCAGTGTATATTAGAGGCTGATCCATCCCTCTGGGAAGTGTATATTGTAgcatttaaaggcccagtgcagtcaacatttagattgttgtgttttatatatatttccacactatgaggttggaataatactatgaaattgtgaaaattatgatcatgcctttttagtgtaagagctgtttggaaTGTCAGTCTGTTTTGGTTGGGtgactttttggcctgaatggtGACATATCCAGGagctaaatgtattaaaaatattaaaaatattatccagttttcagttttcccctccccactcagaccactcccagacattcCAAGCTAAATTCttccttgagaaattgctctttgctgacaagctatttttgtttgtttttgaacatttgaattgaaaacaatgACAGTAAGGTACCgaattgttacccagaaaataTTCAATATTGAGAAACAAATGGCTACATTGGACTTTTAATACAGATGTCTTTCAAGATATAATATTTTCTAGTGTCCCGTGAAATCAAATTCCTTGCTCACGTAAGAACCTGAAGTCATCAGGAACCTCTTTGTCTCTGAAATCATGACATCATCTGTGTCTCTGAGCTGGATTGAACCATTGGGAAACAGCTCCTTCTATAGAGTAGAATGGACTGATGGCAGTAGAGATATGAATTGAACTACCATTGAGACAGCCTTTAATGTAACTGAGCTGACTGCTGGAGTGCAGTACAGACTCATAGTTGCTGCAGTCGCTGCTGATAAGACTACTGAAGGATTACTCATCATGTTTAACCAGTATATCTGTCAGTCACTGTTGTTTTGGTTCACATAATTTTCTCTTTTGAAGGGAGTGTAGACTCCAACTGATCCAGAATATTTAGGAAATGTGTTTATCTGCAATCAACTGCAAAATTGGGCTTGGATAGTATGATTAAGTGCTTGTCCTTTATTGAAAACTAATTTTTTTGTCCCCAAAACGTTTCATGTCATTGATAATGCTTACTATctttaaatgtgtttttagagGTACCATTTTTGTGTCCTACATACTGACCTTAAATGTATGTAGAATTAGCATGCTTCTGATCATATATATATAGACTGTATGGTGATTACCATGAATAATAATGATTCTGGTGATCTTTTCCCAAAATATAACTTTCTTGCACGCACAGAGCCTGCAGTCATCAGGAACCTGACTGTCACTGAAATCACAACATCATCTGTGTCTCTGAGCTGGATTGAACCATTGGGAAACAGCTCCTTCTATAGAGTAGAATGGACTAATGGCAGTAGAGATATGAATACAACTACCAATGTGACAGCCTTTAATGTAACTGAGCTGACTGCTGGAGTGAAATACACATTCAGGGTCACTGCAGTGGCTGGTGATAATATAACTGAAGGAAAAGCTCAGGAGAAAGCACTCTTTACAAAACCTGAAGTCATCAGGAACCTTAGTGTCTCTGAAATCACAACATCATCTGTGTCTCTAAGCTGGATTGAACCATTGGGAAACAGCTCCTTCTATAGAGTAGAATGGACTAATGGCAGTAGAGACATGAATACAACTACCAATGAGACAGCTTTTAACGTACCTGAGCTGACTGCTGGAGTGAAGTACACATTCAGGGTCACTGCAGTGGCTGGAGATGAGATGACTGAAGGCAAAAATATCAGTGTTTCACTCTTTACAAGTAAGATGAAGTTTAAATTGTCTGGACTCTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2515732 lncRNA upstream 9610 10848547 ~ 10858751 (+) True G2198650
TU2515704 lncRNA upstream 91052 10777106 ~ 10777309 (+) True G2198626
TU2515674 lncRNA upstream 131109 10736012 ~ 10737252 (+) True G2198598
TU2515658 lncRNA upstream 156114 10711043 ~ 10712247 (+) True G2198583
TU2515576 lncRNA upstream 241700 10602875 ~ 10626661 (+) True G2198501
TU2515730 lncRNA downstream 7632 10885421 ~ 10889405 (+) True LOC110521306
TU2515773 lncRNA downstream 54544 10932333 ~ 10932563 (+) True G2198687
TU2515774 lncRNA downstream 55207 10932996 ~ 10933327 (+) True G2198688
TU2515786 lncRNA downstream 74189 10951978 ~ 10952300 (+) True G2198700
TU2515790 lncRNA downstream 84258 10962047 ~ 10962470 (+) True G2198703
XM_021598769.2 mRNA upstream 392798 10471852 ~ 10475563 (+) True LOC110521301
XM_036969078.1 mRNA upstream 409705 10322109 ~ 10458656 (+) False LOC110522733
XM_036969077.1 mRNA upstream 409705 10322110 ~ 10458656 (+) True LOC110522733
XM_021598768.2 mRNA upstream 555304 10281372 ~ 10313057 (+) True LOC110521300
XM_036969320.1 mRNA upstream 562908 10298713 ~ 10305453 (+) False LOC118945815
XM_021598782.2 mRNA downstream 43499 10921288 ~ 10922316 (+) True LOC110521307
XM_021598787.2 mRNA downstream 192115 11069904 ~ 11122397 (+) False LOC110521310
XM_021598790.2 mRNA downstream 192115 11069904 ~ 11122397 (+) False LOC110521310
XM_021598791.2 mRNA downstream 192115 11069904 ~ 11122397 (+) False LOC110521310
XM_021598792.2 mRNA downstream 192115 11069904 ~ 11122397 (+) False LOC110521310
TU2515291 other upstream 644244 10221650 ~ 10224117 (+) True G2198247
TU2514976 other upstream 1248074 9619867 ~ 9620287 (+) True G2197955
TU2514689 other upstream 1418708 9444364 ~ 9449653 (+) True calcb
TU2513860 other upstream 2272853 8593374 ~ 8595508 (+) True G2197055
TU2512716 other upstream 2775552 8084885 ~ 8092809 (+) True LOC110522717
TU2515932 other downstream 266424 11144213 ~ 11144672 (+) True G2198837
TU2517440 other downstream 858685 11736474 ~ 11796618 (+) False LOC110521323
TU2517439 other downstream 859313 11737102 ~ 11796935 (+) True LOC110521323
TU2519632 other downstream 2323349 13201138 ~ 13201491 (+) True G2202196
TU2519728 other downstream 2414447 13292236 ~ 13295160 (+) False LOC110521355

Expression Profile