RNA id: XM_021598830.2


Basic Information

Item Value
RNA id XM_021598830.2
length 2309
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110521334
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 12415118 ~ 12423578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTGTGTAGCTCTAGACGGAGCTTGGCACATTCCCAACTCCATCTCCGACTCTGGGCGTCGGGATCGTGGGTACCAGTAATAACCGTCAAGGGCGCTTTTCGGACATAGAAGCAAATGCTTTTGAATAAGAAATGCGATCTTGTGTCCATTTAACCTTTTACAATCTGTTTTATATTCAGAGGCACAGACGAAATTCAAACATACCCTACTTCACATGGTCTCCTCCCTCGGGGTCACAACCTTCACCCTGTGTGCTTTGTGCATTGACCGCCTTCGCGCCGCCACCAACGCCCAGATGTATTACGAGATGATTGAAAACTGCGCCTCCACGGCCGCCAAGCTGGCCGTTATCTGGATCGGGGCTCTCTTATTGGCCCTGCCAGAGCTCCTGATCCACCAGCTGGTCACTGAAGATGGCGAGCCTCCGGATGTGACGCCCTGCCAGCGCTGCGTGGTTCGTATCTCCACCGACCTCCCCGACACGCTCTATGTGCTGGGCCTGACCTACGACGGAGCCCGCCTCTGGTGGTATTTTGGCTGCTACTTCTGCCTGCCAACGCTGTTCACCATCGGCAGCTCCCTAGTGACTGCCCGTAAAATCCAGCAGGCCGAGCGGGCCTGTGTGCGTGGCAACAAGAAGCAGCTCCAGCTGGAGAACCAGATGAACTGCACGGTTGTGGCGTTGGCCATCCTCTACGGCTTCTGCATCATCCCTGAGAACATCTGCAACATCGTCACTGTCTACATGGCAGCGGGTGTGCCCAGACGGACCCTGGACATTCTCCACCTGGTCAGCCAGCTGCTGTTGTTCTGTAAGTCGGCGGTGACACCCGTCCTGCTGTTCTGCCTGTACCAGCCCTTCAGCCGGGCCTTCctggactgctgctgctgctgctgtaacgAGTGCGGCCCTCCCAGGTCTtccaccaccgccaccaccagcGAGGAGAACGAGCACGAGTGCACCACCACCGACCTGGAGCTGTCACCATTCAGCACCATCCACAGGGAGGCTTCCTCCTCCTACACCACTGTGGGGACCCACTGCtgagaggtcaaaggtcatgaCCTCCTTCAGAAAGTTACAACTGCCATGTGAAGAGTTCAAGAGGTCGGACTTTAAACCAATTGGACCGGTTTCCCCACACCCAGGTTAAGGTTACTCCTGGAATAAAAGGCATGCTCAATGGACAATCTCCAGTGAGAGTGCTTGTAAATCAGAGAATAGGCTTAATCTGAGTCTGGGAGACCGGCCCTTAAGAGTTATGATCAGTTCATTTTTTATTCTTGTCAATTTAGGAATTGAATTGATAATGCGAATAAAGGGCACATCCCATTTTAAATCCATGTCCACTTGACTTTGAATTAAATTGACGTAAACTCTGGTGGACATAAGTGTCTTGGTCTACTTGAGGGCAGAGTTCTGTATACGTACTATACTGTCTGTCTACGCTTTGTTtacagcagtggtcaccaaccgtggttgatctccaaggcattcctagtcaatcaccaaacatttctgtaaaaaaaaaaacaataaagccTTGCGTTCCTATTTTGTTATTTGTTTTGCGCTGTTGGCGTTAGTTGCACTTTATTTTTGATTTCTTTTAGGTTGTAAGATGTagatgcacttgattcagcagccctagcgcCAGGAAGGCAAAGTCTTCCCATTTTGAATAACGTTTTTTAAATAGAATTTccaaatggtctgagaagaaaaACATTGGCAGGGAAATTCAAGcattgataatgtattgggcctatagcctactgcacaaacctcattgttaCAGAACTGTAATTGGTTACGTTTTCTAAGTCATGGTTTGTAAAAATCTGAGCAGTAGATCTCAGCTTCCATTTTGACTCAAAGTGATCTTCActcaaaggttggtgaccacttgTTTACAGAAACCATACGGAAAGGAATACATATGTATAGTTCAATTCAATTTATAGCAAATTCATTATAAACTCACCAGTGTTTTCTCTttttaattattatattattttttgggggggggtcatAATGTTCTTTTTCTGCTTCCACAGAGTGTCTGTGTCAAATGGAAAGTAATATATTGAAAATGGCTGATCGTACTGTATTGTGTTTAGCTTATAATGGTGATTCTTGTGAATCAGGTCAAAGTTATGCCTAGCTCCCTTGCTATGTAAGTATATTATGCACTCTGTATTTGATAGCAGAAAACTGTACGATacacttcagtcagtcagtaaagtTACTGGAGtggtcttttttgttgttgttgctcacTTTAATAAAAAAAGAACACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2517898 lncRNA upstream 96052 12318851 ~ 12319066 (+) True G2200626
TU2517897 lncRNA upstream 96272 12318632 ~ 12318846 (+) True G2200625
TU2517890 lncRNA upstream 105182 12309694 ~ 12309936 (+) True G2200618
TU2517888 lncRNA upstream 110255 12304203 ~ 12304863 (+) True G2200616
TU2517862 lncRNA upstream 154448 12260313 ~ 12260670 (+) True G2200592
TU2517970 lncRNA downstream 5309 12428887 ~ 12429318 (+) True G2200687
TU2517977 lncRNA downstream 14741 12438319 ~ 12438552 (+) True G2200694
TU2517979 lncRNA downstream 16734 12440312 ~ 12440539 (+) True G2200696
TU2517992 lncRNA downstream 40644 12464222 ~ 12464537 (+) True G2200708
TU2517958 lncRNA downstream 44979 12468557 ~ 12469544 (+) True G2200675
XM_021598828.2 mRNA upstream 13315 12374030 ~ 12401803 (+) False pot1
XM_036968596.1 mRNA upstream 13315 12374030 ~ 12401803 (+) True pot1
XR_005040859.1 mRNA upstream 13452 12353041 ~ 12401666 (+) False pot1
XM_036968916.1 mRNA downstream 104034 12527612 ~ 12545633 (+) False LOC110521338
XM_036968915.1 mRNA downstream 104035 12527613 ~ 12545633 (+) True LOC110521338
XM_021598837.2 mRNA downstream 163395 12586973 ~ 12609390 (+) True slc13a1
XM_036969260.1 mRNA downstream 198756 12622334 ~ 12890397 (+) False cadps2
XM_036969261.1 mRNA downstream 198756 12622334 ~ 12890397 (+) False cadps2
TU2517439 other upstream 618183 11737102 ~ 11796935 (+) True LOC110521323
TU2517440 other upstream 618500 11736474 ~ 11796618 (+) False LOC110521323
TU2515932 other upstream 1270446 11144213 ~ 11144672 (+) True G2198837
TU2515724 other upstream 1537329 10868361 ~ 10877789 (+) False LOC110521306
TU2515291 other upstream 2191001 10221650 ~ 10224117 (+) True G2198247
TU2519632 other downstream 777560 13201138 ~ 13201491 (+) True G2202196
TU2519728 other downstream 868658 13292236 ~ 13295160 (+) False LOC110521355
TU2519759 other downstream 1012230 13435808 ~ 13462187 (+) True tnnt3a
TU2521265 other downstream 2135869 14559447 ~ 14567103 (+) True G2203653
TU2521639 other downstream 2848467 15272045 ~ 15273733 (+) True G2203973

Expression Profile