RNA id: TCONS_00005348


Basic Information

Item Value
RNA id TCONS_00005348
length 1644
RNA type mRNA
GC content 0.48
exon number 7
gene id XLOC_002896
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34086591 ~ 34107919 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTATAAAGCTTTTTGACGTAGCAGAAACTCTCATTAGCTTCTTTGGATGtctagtagttcagtactttctgcgATTCAACAGTACAGTGATACAATGGCATTTTCAAAACTGATTAACCGTCTGAAGAAAGCGTTTGGTGTTAAGTGTGCGAACGAACAACCGTGTGAGCCACTCGAACCCACCGGCAGCACGACAGAGAATCACCGTCATCTGATGACCGATGACCCGGCCGTCGCTGCAGGAAAACAGGCAGGGAGACAGAAAAAGAGGAAACTCAAATTGTCTCCCATCTTCTTCGCctgtttctccagaagaagagcTACTGTTGTTGATCAGCTATGTGTGCAGGAGATCCACGAACTTCACGCAGAGCCCATCAGTAGCTCTAAATTCTTCTGCACTGCTGTGAGCAACCTGGAGCTGGAAGTTCTCCAACCTCCAGCTCTTGATGCTCCAGCAGACGAAGATTTGGAATCTAAACCGGAAATGAACAGCTTTGACTCTGCAGTGGTCATTGAGAACGACTCTGCAGAGCTTCACTTCCCAGAAGACATTGAATCCTCCCTCAGTGAGGACAGCCTGGAGCAAGAGCTTGATAGTCCTCCAAGTTCACCATCTGATGAGGACAATGAATCTCCAGTGAGCCAGCAGTTCATAACAGATGACATCTGTGACTCTGCCCTGGATGAAAACTCAAACCCTTTACCGGATCAGGTCTCACAAGAGGACTCTGCTGTGAAGTCTACAGCAGATGatgggacctgcttggacaataATGACATCAGCTGCCGCTACAAACTCGGAAAGCAGCTTGGTGAAGGAGGTTTCGGCTCCGTGTATGAGGGGATTCGCATACAGGATGGTCTGCAGGTGGCAGTTAAATTTGTCCAGAAGACCCCAAATATGCAAGATGTCAGCTCTtcatgtgaccaGCCACTTCCTCTAGAGATCACCTTGGCAAACATGGCCAGCGGTGGCTCCAGGTGTTCGAACATTATTCAGCTTCTGGACTGGCAGGTCTTTGAAAACCATTATGTCATGGTGATGGAGCGGCCTAGTCCAAGCATGGACCTGGAGGCATTCCTTGAAGTCAGCGGAGGAGTCCTCAGTGAGAAAACAGCACATACCATCATGAGGCAAGCTGTTTATGCGGCCAACGTGTGCTGTTACCGCGGGGTGTTCCACCGGGACATTAAGCTTCAAAACCTGCTGGTGAACCCCGACACACTGGAAGTCAAGCTGATCGACTTCGGGTGTGGAGACTTCATGATGGAATCAGCCTACAGTATCTTCTCTGGCACAGAAGCGTACATCCCGCCAGAGTTTTATGAAAAAGGATGCTACCGGGCCAAACCAGCGACGGTCTATTCTCTTGGGGTTCTTCTGTTCACAATGCTCCATGGAGAATTCCCATCAGCGTATGACCTGTACTACCTCCAACATGACTGgtccaaatttaccctctctcaagAATGCTGTGATATGATGAGGGCTTGTCTGCATGAGAATCCAGAGTGCAGAATTCCTCTAGAAGAGATGCCTTACCACGACTGGTCCATGCTGGAGTTCTGAGTCACATTAGCagaatgttttgtatatttgatttttgtacatgtctgtaataaagatatattttattgAA

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141211-42 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000145279

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005339 lncRNA downstream 224369 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00006085 lncRNA downstream 439944 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005338 lncRNA downstream 485791 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006084 lncRNA downstream 940160 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00006083 lncRNA downstream 1207789 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006086 lncRNA upstream 88863 34196782 ~ 34198566 (-) True XLOC_002900
TCONS_00006087 lncRNA upstream 644391 34752310 ~ 34772155 (-) False XLOC_002903
TCONS_00005364 lncRNA upstream 659937 34767856 ~ 34772211 (-) False XLOC_002903
TCONS_00006088 lncRNA upstream 660057 34767976 ~ 34772211 (-) False XLOC_002903
TCONS_00005773 lncRNA upstream 660092 34768011 ~ 34768673 (-) False XLOC_002903
TCONS_00005346 mRNA downstream 14954 34086591 ~ 34089779 (-) False XLOC_002896
TCONS_00005345 mRNA downstream 37447 34059007 ~ 34067286 (-) True XLOC_002895
TCONS_00005344 mRNA downstream 57976 34043561 ~ 34046757 (-) True XLOC_002894
TCONS_00005341 mRNA downstream 71053 34021368 ~ 34033680 (-) False XLOC_002893
TCONS_00005342 mRNA downstream 71278 34024254 ~ 34033455 (-) False XLOC_002893
TCONS_00005349 mRNA upstream 12624 34120543 ~ 34123733 (-) False XLOC_002897
TCONS_00005350 mRNA upstream 12624 34120543 ~ 34150577 (-) False XLOC_002897
TCONS_00005351 mRNA upstream 12626 34120545 ~ 34123733 (-) False XLOC_002897
TCONS_00005352 mRNA upstream 39565 34147484 ~ 34150672 (-) True XLOC_002897
TCONS_00005353 mRNA upstream 63755 34171674 ~ 34174858 (-) False XLOC_002898
TCONS_00005343 other downstream 71312 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005331 other downstream 727519 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 727647 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005329 other downstream 727792 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005309 other downstream 1494039 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005358 other upstream 219343 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005381 other upstream 876699 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005403 other upstream 1261918 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 1512414 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005408 other upstream 1546326 35654245 ~ 35654354 (-) True XLOC_002923