RNA id: XM_021598911.2


Basic Information

Item Value
RNA id XM_021598911.2
length 3193
RNA type mRNA
GC content 0.49
exon number 15
gene id cnot2
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 13982925 ~ 13991370 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGATAGTGAGTTCACCCAACAATATATGTAACTAGAAAAATAATACTGCAGACAATTCAAATTCATCCTGTAGTGTATTAGCCACTTTGTACCCACAGAAGTAGAACGTTCAAAATTTGTGTGCGGAAATGGTTAGGAGGTTGTGGAGAGGTCAGAGTGCAAAGGCTATTCACCCAGGATTCTCGATTGTGGAATACTGAATACACAGCCATCTTGGATCTAGCTACGAGGAGAAGGGAAATTAATGCGGTGACAAACGGCATGTTCAGTGCTACGAGAAAGAAGTTTGTAGAGGGGGTGGAAAGTGACTACCCTGATGAGAACATGTACTACAGCCAGCCGTCCATGTACCCACATCGGTCGGACAAAGACGTAAGTGCTCTGTCTGCTCGATCGCACATCCCTACTACAGCTCCCTTTGAACTTGAAATGCTCTCGTCTCCCTCACCGTCGTCATCAGGTCAACTATCCCAGCTTGGGGCCAGTTTATATGGCCCACAGAGTGCACTAGGCTTCTCGATAAGGGGCATGGGCAACAACACGCCACAGTTAAACCGCGGCTTAACGCAAGGCACTCCGCTACCGAGCCATATCACCCCCACCACTGGGGTACCCACCATGTCCCTCCATACCCCACCCTCGCCAAGCAGGGGGATCCTGCCGATGAACTCGAGGAACATGCTGAACCACTCCCAGGTGGGCCAGGGCATCGGGATGGGCGGCGGCAGGACCAACAGCATGGGCAGCTCAGGGCTAGGCAGCCCCAACCGCAGCCCCCCCAGCATTATCTGTATGCCCAAACAGCAGCCTGCACGGCAGCCCTTCACCATCAACAGCATGTCGGGATTCGGGATGAACCGGAACCAGGCGTTTGGGATGAACAACTCGTTATCAAGCAACATCTTCAATGGCACAGACGGCAGTGAAAACGTGACGGGGCTAGACCTGTCTGACTTCCCTGCGTTAGCAGAGAGGAGTCGGAGGGAAGGAAGCGCAAACCCAACACCGCTACTCAACCCACTAGCTGGAAGGGCCCCCTATGTTGGCATGGTGACGAAGCCATCGAACGAGCCGACGCAGGATTTCTCCATCCACAACGAGGACTTCCCTGCACTGCCTGGTCCCAACTACAAGGACCCCACGTTGAGCAACGATGACAGCAAAACaAACCTAAACTCTACAGGCAAGAGCACGTCCAGTGCAGACGGTCCTAAGTTCCCCGGAGACAAGACGAGCTCAGCTCAGAACAACAGCCAGAAGAAAGGGATCCAGGTGTTACCTGACGGGCGGGTGACGAACATTCCCGGGGGAATGGTGACGGACCAGTTTGGGATGATTGGCTTGCTGACGTTTATCCGAGCAGCGGAGACGGACCCGGGCATGGTGCACTTGGCACTGGGTAGTGACCTCACAACGCTTGGACTCAACCTCAACTCTCCAGAAAACCTGTACCCCAAGTTTGCCTCCCCCTGGGCATCAGCACCGTGTCGACCTCAAGACATTGACTTCCACGTCCCCTCTGAGTACTTAACCAACATCCACATAAGGGACAAGCTGGCAGCTATTAAACTGGCGCGGTACGGTGAAGACCTGCTGTTCTATCTGTACTACATGAACGGAGGAGACCTGCTACAGCTCCTGGCAGCAGTAGAGCTCTTTAACCGGGATTGGCGGTACCACAAAGAGGAGCGGGTGTGGATCACGCGGGCGCCGGGCATGGAGCCCACACTAAAGACCAACACCTATGAGAGGGGGACCTACTACTTCTTTGATTGTCTTAACTGGAGGAAGGTAGCCAAGGTAAAGGAGTTCCACCTGGAGTACGAAAAGCTAGAAGAGAGGCCCCACGTCCCATCTACCTTCaactacaacccagctcagcagGCCTTCTGAGGCCTAGTACAGTCCCAGGGGGACCGCTGTCCCTGCATACCTTCCTCCCAGCCTGAAGAGGATGGTGCGCTGCGGCCCAGGCGTCCATCCTGGTTTTTATTCCTTGAGGATCTGGCTAAAATGACTTCAGAGAAGGCGCTCACCACCGCGTAAGGGTGGGGAAAATTGAGCCCTGCCTTTCCCAAATTATGTGCTGCCCAAACACCTCCACTTGTTCTGTTTTTATTCCTTTCGTTTCatcgtttttgttttgtttttgaccaGGGTCTGTGTTTTGTTTACGTCTCTGAATCAGAAGCCTGTTTGGTCCAAGGTAGGAAAACGGACAATACCGACACACTTTACAGTGACAGAACAAGGGTTATGCCTcatctcccccccaccccccaagtGTTAAGAACAGAGAAAGGTGGGGAAGGCTAAGCCAACAAGTACCATCCCACACGTGAGAACGAAAGGGCGGAAGAAGTGCAATGTTCATTGTTGCATTATTTAGTAATAAAAGAACACAAATATTGTTTgtgctttttttttaaatgtgaaaaCACTCCCTCATATTTTGTTTTGGATAGATAAGTAGCCTGTCTACAAATGTCTCTCcacttctttctctccatctctcctcttgtaCATTCCCTCTTTTCTTCTCCACCGGCCCCACATCCCTTTCTTTCCTTCCTTTTGACTGGTATTTTCTGTCTGGCTTCAATATACAAATCAGAGACTGTTTTAGTGAAGTGTTGTTAGATTACCTACCCAGCTTCATTGTTCCAGAGCGAGCAAAACACTTTCCAGTCTTTGTTACGATTTTGTAAAcgtgtacattttttaaaaaacattttgaacATCACATGAATAAAGATATATATGTAcgaatgtgtatatatatgtatgtgtatacatatatatatggcATCTATTTTGGAGGAAAAAATTGCCCTGCCTTGTACCTCATCTTTAGGAGGTCAGCATGGAGTACAATATGTAGATAAAACAGGACATTTCTGGATCTGCTGGACAGGGCATCATACTCGGCACTGTGGGCACTTACGAAGAAATACAAATTAAAAAGACAAACAAGGAAAGGCCTGATTCTCAGGAAAAACAAGGACATCCACCCCTAAAGTCCAAAGCAAGAGGACAGATGGACACATTTCACTCAAAGCTGTTTAAACAGCAGCCTTTCATAAGAAAAGGAAAAATGAATAATAATTTGAAGGGGAAAAAATCATACAGACCAATCTTGTATTTTCTGACGTTCAAAGCTTCTTTTTAATAAAGCAAAAAAGGCTTTCCTGAA

Function

GO: NA

KEGG:

id description
K12605 CNOT2, NOT2; CCR4-NOT transcription complex subunit 2

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU2520549 lncRNA downstream 66592 13916032 ~ 13916333 (-) True G2203024
TU2520540 lncRNA downstream 67362 13915279 ~ 13915563 (-) True G2203015
TU2520539 lncRNA downstream 68118 13914531 ~ 13914807 (-) True G2203014
TU2520544 lncRNA downstream 74733 13907977 ~ 13908192 (-) True G2203019
TU2520542 lncRNA downstream 75554 13907109 ~ 13907371 (-) True G2203017
TU2520581 lncRNA upstream 14086 14005456 ~ 14008520 (-) True G2203055
TU2520582 lncRNA upstream 19325 14010695 ~ 14011006 (-) True G2203056
TU2520584 lncRNA upstream 32981 14024351 ~ 14025597 (-) True G2203058
TU2520595 lncRNA upstream 49400 14040770 ~ 14041055 (-) True G2203069
TU2520600 lncRNA upstream 56177 14047547 ~ 14048491 (-) True G2203074
XM_021598896.2 mRNA downstream 29620 13939537 ~ 13953305 (-) True slc41a2a
XM_021598892.2 mRNA downstream 44292 13916667 ~ 13938633 (-) True nfybb
XM_021598895.2 mRNA downstream 44329 13916667 ~ 13938596 (-) False nfybb
XM_021598893.2 mRNA downstream 44517 13916667 ~ 13938408 (-) False nfybb
XM_036969117.1 mRNA upstream 249801 14241171 ~ 14283128 (-) False LOC110522742
XM_036969116.1 mRNA upstream 249801 14241171 ~ 14299085 (-) False LOC110522742
XM_036969114.1 mRNA upstream 249801 14241171 ~ 14299086 (-) False LOC110522742
XM_036969115.1 mRNA upstream 249801 14241171 ~ 14299086 (-) False LOC110522742
XM_036969111.1 mRNA upstream 249801 14241171 ~ 14299087 (-) False LOC110522742
TU2520518 other downstream 85227 13862504 ~ 13897698 (-) True si:ch211-106e7.2
TU2520391 other downstream 311945 13667214 ~ 13670980 (-) True urahb
TU2519576 other downstream 884622 13098030 ~ 13098303 (-) True LOC110521347
TU2519561 other downstream 895402 13080596 ~ 13087523 (-) True LOC110521346
TU2518917 other downstream 1732943 12248951 ~ 12249982 (-) True G2201542
TU2520586 other upstream 19783 14011153 ~ 14012512 (-) True G2203060
TU2520927 other upstream 183071 14174441 ~ 14244462 (-) True G2203363
TU2521808 other upstream 533594 14524964 ~ 14525468 (-) True G2204129
TU2521869 other upstream 635724 14627094 ~ 14629178 (-) False G2204181
TU2521887 other upstream 635724 14627094 ~ 14629178 (-) False G2204181

Expression Profile

XM_021598911.2 Expression in all Baseline Samples

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XM_021598911.2 Expression in each Bioproject

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XM_021598911.2 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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