RNA id: XM_021598919.2



Basic Information


Item Value
RNA id XM_021598919.2
length 4194
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC110521389
representative False

Chromosome Information


Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 14301881 ~ 14359576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGAGTACAAATTCAGTTGACAATCTGGTTCGCCAAAGATCATAGGTGTTGAACTGTCCCTCAAAACAGTTTTGGAATCTTTACCCCATCCTGCCTTATCATGTTGGGCGACATGGAGAGCCTGCCCAAGATGGACCCCTCCAACGACCACAGTCGGCCCCTGGACATTGTGCCACAGAGCGATGAGAAGATGAAGGAAAGGGGTCAGTGGGGCAACAAGGTGGAGTTTGTCCTTTCTGTTGCCGGGGAGATCATAGGACTGGGAAATGTGTGGCGCTTCCCTTACCTGTGCTACAAGAACGGAGGAGGTGCTTTCTTCATCCCCTACCTGATCTTCCTCTTCACGTGTGGAATCCCAGTATTCTTCCTGGAGACAGCTCTTGGACAGTACACCAGCGAGGGAGGTGTCACCTGTTGGAGGAAGATCACTCCACTGTTTGAAGGAGTGGGCTACGCCACACAAGTCATCGTGGCTCTGTTGAACTTCTATTACATCATCGTCCTGGCCTGGGCCATCTTCTACCTGTCCTACTCCTTCACCTGGGACCTGCCCTGGGCCTCCTGCAACAACACATGGAACACAGATTCTTGCATGGAGTTCCAGAGGAGGAATGACTCTTTCAATCAGCCACGTCTGAACGCCACGTCTCCTGTCATTGAGTTCTGGGAGCGGAGGGTTCTGCGTATCTCCTCTGGCATAGACAATATAGGATCTCTCAACTGGGACCTGGTTCTGTGTCTGGCCATAGCCTGGATACTGGTTTACTTCTGTATTTGGAAGGGAGTAAAGTCCACTGGCAAGGTGGTGTATTTTACAGCTACCTTCCCCTACATCATGCTGTGTATCCTGCTCATCAGAGGGGTCACCCTACCGGGAGCCTTCATAGGAATCAAATTCTACCTCTACCCAGACCTGAGCCGCCTGTCCGACCCACAgGTATGGATGGATGCAGGGACTCAGATCTTCTTCTCGTATGCCATCTGTCTGGGGTGTCTGACTGCCCTGGGGAGCTACAACaagtacaacaacaactgctACAGAGATTGCTTGTCGTTATGCTTCCTGAACAGTGGGACCAGTTTCGTGGCTGGCTTTGCCATCTTCTCCATCCTGGGCTTCATGTCTTATGAGCAAAATGTGCCCATCTCAGAGGTGGCAGAATCAGGTCCTGGTCTAGCCTTCATAGCATACCCCCGTGCTGTGTCTATGatgcccttctctcctctctgggccTGTTTCTTCTTCATCATGATCGTCTTTCTGGGGCTGGACAGCCAGtttgtgtgtgtggagagtCTGGTGACGGCCATGGTGGATATGTACCCTAAAACGTTCCGTCGTAAGAACCGCAGAGAGCTCTTCATTCTGGCGGTTGCCATCTTCTCCTTCCTCATGGGTCTCATCATGCTGACCGAGGGAGGCATGTACGTCTTCCAACTCTTTGACTACTATGCTGCCAGTGGGATGTGCCTGCTCTTTGTGGCTGTCTTTGAGACAGTTTGCATTGCTTGGATTTATGGTGCTGACCGTTTCTATGACAACATCGAGGACATGATTGGCTACCGCCCTGGGCCTATTATCAAATACTGCTGGATGTTCTTCACTCCTGCTACCTGCTTAGGTACTTTTGCCTTCTCCCTGATCAAGTACACCCCTCTGAAGTACAACAATGAGTATGTGTACCCCTGGTGGGGCTATGGCCTGGGCTGGCTCCTGGCCCTGTCCTCCATGCTCTGTGTCCCCCTCTGGGTGGTCATCAAAATGTGTTCTGTGGAAGGTACCCTGAAGGAGCGCTTTATAATCCTGACCACACCGTCCACTGACTTACCCAAAACCAAGAAGGAACAAGAGAAGCTGCTGGCCATCTTTGCTGCTGATGGGGACAGCCTCCGTCAGAGACACCCTCCCACCAAGGAAGGCTACTTTCCCGTCAATGAGAAGGAGTCCAACTGCTAGAGCTGGGAACGTGTACCCAGGCCTTGTGAGGTCCCATGTCCCTCCCCTCGACATGGCATCTGCCTTGGGCCCgtcccaaacctctcctcaacGATACCTCATAACTGCACAACTGCGGCCAAATGAGCACAGATGCAGAGACACTGGTGCTGCTGTGCCCTGGCTCTTTCTCTCCTACATGGTCTctcagagacaatatagactacTGTTTCAGGTGCTGTTGTTAAATTGTGTATGTACTGATGTTCACACACTCAATGCTACTGGCTCTTCCATCTACACTTCCCATCCACGGGACAGTTGTTCGCCACTTCTGCCTCACACTGTTGCCTGAACAACCAGGAACTCTAGCTGGGTTGTGCTGATTTAGTTCGCCAATGACGAAGTGTAGCAGACATTGAAATGGTGTGATTCAGTGATTAGTTATATGTCCATTGTGGTTGAGACTTGAGAATGTTTGTCTGATGATCACATCTGCTTTCTAAGGATGTGTTTTTTGTTTTCCTTCTTTTCATGGACATCTCTGATGTTCAGCTCGGCACGTATTGTACGAATACTACTTCAAGTTGTTTTTCAGTTAGTTCTAGCTTCTGGCGGAATGAAATGTTTCCTTCCAAGCACAGTCGTAGAGTTTCAGTTGAATACAGTCCAGTTACATTGTGATGTTTATTTCAGGACTTAGTTGAAAGGACTGCCTCATACAGCACATCGTAACAATGCTTTACAACATAATCCCTCCGTCTGTCCTCCCTCTACCACGTTCTCATGTAGGGTTGCTCCTGATTTCTATTCAGCTGTGAGAGACACTGTGATGAGGTATTATTTTAGGGCATTATGTTGAACCTGCTACAGTCATATCAGTTGATATAGTAAATACATCAATCTGATCCATATGTTAGTTAATTTATCCCGGGATGCTAAACCTTCgctgacaacatgtttagacgaCAAATAAAGGAAAAAATAAAGGAATGCGATAACCGCATGCCAACTAAAAGCACCATGTCATTGTGGTTACAAGAAGCAATGCAGAATTGAACAAGAATTCAATGTATACTTTTTTTGCCTCCGAATACTATGATTTTAGATTAATATATTGGCAAGTGCCAACCTATACAGTTTAATTTCCAGATTTATGTCAGAAGAATTGCATCAAAAATACGTCTGAAGCCCAAgtgtctgtctctattatagtaacCTAACATAGCAGGAGTAAAATAAACCTGTAGAAAACAGACTGAATAGGCTTTGCTAGCCTAAGGTTGTTGTTTGAGTTTAGGATTAAGTCAGACATACTGTAAATGTATTGCTTTGATTCAAAAGCTTACTTGGACATATAATCATTGTGTATTAGAATTTTAAtcatacccactgggcacagacgtcagttcaacgtctagttttgatttacattttgttgagttgtcaactaacgtgaattaaacatgaaatcaacaacaattttcaacatgtcaatggatttaggttcaaagttgggtgaCAAAAATACAAAATGCCCCTACGTTGATaattttttgcaaatccaataaATTCTCCTCATTGATTTAACATCACATACATTTTgggggttgaaatgatgtggaaacaacgttgattcaactatttgttttgcccagtgggtagtcCTGTGTTAGGTTTTTTAAGTACTTTGAATTGTAAAACCAGGATATTTGCTCTCATTCTTggcttgatttaaaaaaaactgtatacaatcgtatatatatatatttctaaacTGTATACCAAGTCCAAAATGTGATAAAGCACATGACAAACATAGTTTAAAAACTAGTGAAAGTATGGAttgtgttaaatatatttttgttgtacAGAATTTTGGCATTTGAAATCattgtacagtacactacagtataccATCATAGCGAGCAGCCTAGAGGTGAGAAGCTGGAGAGAAAGAGTTTTTCGGTAATACTGAACTTGAGTTTCATACTTTTTACCTTGGAAAAATGAAATGTCTCGGAAAGTCTGTTATTTGCTTATATTGCGGCCTATTCATTAATTAATTATATCATCATCTACTTTGCCATATCATACAATAACAACTTTGAAAAGTATAAGCTCTTACACTTCCAGTATGTGTTCGTCAGTATTGCCAACGACATGTCCAGTGAAGTGCAAAGCTGAATACCGTTCACATGTATCATTACAACTGACattgtaaaataaaaacatttatattAAAAGTTTAAAAACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2520982 lncRNA downstream 17512 14283613 ~ 14284369 (-) True G2203417
TU2520873 lncRNA downstream 134448 14126480 ~ 14167433 (-) True G2203326
TU2520858 lncRNA downstream 156624 14114382 ~ 14145257 (-) True G2203312
TU2520886 lncRNA downstream 165169 14136411 ~ 14136712 (-) True G2203335
TU2520602 lncRNA downstream 251296 14050141 ~ 14050585 (-) True G2203076
TU2521178 lncRNA upstream 67156 14426440 ~ 14427509 (-) True G2203573
TU2521212 lncRNA upstream 115145 14474429 ~ 14475703 (-) True G2203604
TU2521787 lncRNA upstream 127436 14486720 ~ 14488432 (-) True G2204111
TU2521812 lncRNA upstream 175669 14534953 ~ 14535316 (-) True G2204133
TU2521827 lncRNA upstream 193005 14552289 ~ 14552537 (-) True G2204147
XM_036969111.1 mRNA downstream 2794 14241171 ~ 14299087 (-) False LOC110522742
XM_036969112.1 mRNA downstream 2794 14241171 ~ 14299087 (-) False LOC110522742
XM_036969113.1 mRNA downstream 2794 14241171 ~ 14299087 (-) True LOC110522742
XM_036969114.1 mRNA downstream 2795 14241171 ~ 14299086 (-) False LOC110522742
XR_002473057.2 mRNA upstream 72720 14432004 ~ 14433690 (-) True LOC110520943
XM_036969227.1 mRNA upstream 202613 14561897 ~ 14615359 (-) False LOC110517476
XM_036969228.1 mRNA upstream 202613 14561897 ~ 14617511 (-) False LOC110517476
XM_036969229.1 mRNA upstream 202613 14561897 ~ 14617511 (-) False LOC110517476
XR_002473131.2 mRNA upstream 385517 14744801 ~ 14746591 (-) False LOC110521392
TU2520927 other downstream 57419 14174441 ~ 14244462 (-) True G2203363
TU2520586 other downstream 289369 14011153 ~ 14012512 (-) True G2203060
TU2520518 other downstream 404183 13862504 ~ 13897698 (-) True si:ch211-106e7.2
TU2520391 other downstream 630901 13667214 ~ 13670980 (-) True urahb
TU2519576 other downstream 1203578 13098030 ~ 13098303 (-) True LOC110521347
TU2521808 other upstream 165680 14524964 ~ 14525468 (-) True G2204129
TU2521869 other upstream 267810 14627094 ~ 14629178 (-) False G2204181
TU2521887 other upstream 267810 14627094 ~ 14629178 (-) False G2204181
TU2521871 other upstream 268965 14628249 ~ 14629178 (-) True G2204181
TU2522053 other upstream 531651 14890935 ~ 14893501 (-) True G2204315

Expression Profile


XM_021598919.2 Expression in all Baseline Samples

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XM_021598919.2 Expression in each Bioproject

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XM_021598919.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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