RNA id: XM_021599245.2



Basic Information


Item Value
RNA id XM_021599245.2
length 8187
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110521588
representative False

Chromosome Information


Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 23895194 ~ 24233242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACGAGAGGAGACCTCGGCATTTTGTCAAGCAAGTGCACCCTGAATCGTGAgcgaataaaatatatttaagttaTTTATTTTTCGTGTCGTTAAGATAAAGAGGTGTGCGCAAGAGCCGGAGCAAATGGTCGTCTCTGGTGAAGGAAACCGTTTTTGGATTAAAAACACTTTATTCCGGCAGAGGGGGATCCTTTAGTTTTTCTATTCTGCAAAATTGTTGGACGGAATTATGACGGAGTATGAAAAGGCGAGTTTATAACCTTTGAAGTGAAGTATTTTTCTTTGCCAAAGCTTGTGCCTCAGATTTTTGGGGAGATGATTCTAAAGAGCTTTGCACTCTGAAATAACGGGACATGGCACTGAGGGAAATTGTCTGAGGTGACGAGTGGTGGAGATCAAGCCTCATGGATATAGACCTACGCACTGACTGGAGTTGATTTATCTGTGGAAGACCTGCTGCAAATGGCTGCCCTGCCTGTGTCGCCAGGATGGACAACAGGATTGTCAATAGGATGCGGCCTGAAAAATATCGGCAAGTGAAGATGTCGCCTCCGCCAGTGTGAAATCAATGGGGAATACTTGCCATGCGAAGAGCCTTTGAAAGTTTTGACAGCCGCGTGTTTGGGAGGCCTGATACTTTGCCTTTGATTGCACCCCTTCCTGTGAGTGGATCTAAAGTGGATTGTTGCTGCTAGCGCTGTGGTGTGATTAGcccctttagtgtgtgtgtgtctactggtgtggcagagggagcatgcccctGCAGAGACCTGGCTGTCTGAAGCTGTACCCTGCCTGGAGGGCCATGCAGCTCCGGCTGGGCGTAGGCCTGGGTCTGGGCCTGGACCTAACCTTCCTGCTGTGGATACTGAGCCTAGCACAGCAGGCCCTGGTCACGGCCTCTCAGAAACTGGACGAGACGGACCCCGTGGTCACCACCGTCTACGGCAAACTGAGGGGCGTCAAGAAGGAGCTCAACAATGAGATCCTGGGACCCGTCATCCAGTTCCTGGGGGTGCCTTATGCCGCACCCCCCACAGGCGAGAGGCGCTTCCAGCCCCCAGAGCCACCCATCTTTTGGCCGGAGGTCCGTAACGCTACGCAGTTCGCCCCGGTCTGCCCTCAGACCATCGTGGAGGGGCGTCTGCCAGACGTCATGCTGCCTGTGTGGTTCACTAACAACCTGGAGATAGTGTCTTCTTACGTACAGGACCAGAGCGAGGACTGCCTTTTCTTAAACATATATGTTCCCACTGAGGATGACATCCGTGAAAGCGGCAGCCCTAAGCCTGTGATGGTATTCATCCATGGGGGATCCTACATGGAGGGCACTGGGAATATGTTTGACGGCAGCATCTTGGCAAGTTACGGCAATGTTATCGTCATCACAGTGAACTATCGGCTTGGAGTATTAGGTTTCTTAAGCACAGGGGACCAAGCTTCCAAAGGAAACTATGGACTTCTTGATCTGATTCAAGCCCTGCGCTGGACTAGCGAGAATATTGCTTTCTTTGGTGGTGACCCTTTACGAATAACAGTTTTCGGATCAGGGGCTGGCGCCTCCTGTGTCAACCTCCTGACCCTGTCCCATTATTCTGAAGGTAACCGTTGGAGCAATTCAACCAAAGGACTTTTCCAGAGAGCTATAGCACAGAGTGGCACTGCGTTGTCCAGCTGGGCAGTCAGCTTCCAGCCTGCTAAGTACGCTCGCATGTTGGCCAAGAAGGTGGGCTGCAATCTGAAGGAAACGGTGGACCTGGTGGAGTGTCTGCAAAAGAAGCACTACAAGGAGCTGGTGGACCAGGACATCCAGCCAGCCAGGTACCATATCGCCTTCGGGCCTGTCATAGATGGAGATGTGATCCCAGACGACCCCCAGATCCTCATGGAGCAGGGCGAGTTCCTCAACTATGACATCATGCTGGGCGTCAACCAGGGCGAGGGCCTGAAGTTTGTGGAGCTCATCGTAGATAATGAGAACGGCGTCCAGGCCAATGATTTTGACTATGCCGTGTCCAGCTTCGTGGACGACCTGTACGGTTACCCGGAGGGCAAAGACATTCTGCGTGAGACCATAAAGTTCATGTACACGGACTGGGCTGATAAACACAACCCAGAGACCAGGAGGAAGACCCTACTAGCTCTGTTCACTGACCACCAATGGGTGGCTCCGGCCGTGGCCACAGCAGATCTCCACTCCAGCTTTGGGTCACCAACATACTTCTACGCCTTCTACCACCACTGCCAGACAGAGCAGGTGCCCCCGTGGGCAGACGCAGCCCACGGTGACGAGATCCCCTATGTGTTTGGCCTGCCCATGATCGGTCCCACAGAACTGTTCCCCTGTAACTTCTCGAAGAACGACGTCATGCTTAGTGCTGTGGTGATGACTTACTGGACTAATTTTGCCAAAACTGGTGACCCTAACCAGCCAGTCCCCCAGGATACCAAGTTCATCCACACTAAGCCTAACCGTTTCGAGGAGGTGGCGTGGACTCGCTACAACCAGAAAGACCAGCTGTACCTCCACATCGGCCTGAAACCCCGCGTCAAGGAGCACTACCGGGCCAACAAGGTCAACCTGTGGCTGGAGCTGGTGCCCCACCTCCACAGCCTAAACGAGGTCACCCAGatcatctccaccaccaccaaggTCCCCCCACCGGAGGTCACGCCCAGGTCACCAAAGAAGATCCCTGTCAACACCAAGAGGCCTAACCCTACGCCTTTCCCCACCGAGACTCAGGACAGTCAGAATCAGCCCTTCCTGGTGGATCAGAGGGACTACTCCACTGAGCTGAGTGTCACCATCGCTGTGGGTGCCTCGCTGCTCTTCCTCAACATCCTGGCCTTCGCTGCCCTCTACTACAAGAAGGATAAGCGGCGGCACGACGTGCACCGGCGCTGCAGCCCCCAGCGCAACACGACCAACGACCTGGCGCACACACAGGAGGAGGAGATCATGTCCCTGCAGATGAAGCACACAGACCTGGACCACGAGTGCGACGCCATGCATCCACACGAGGTAGTTCTGAGAACTGCCTGCCCGCCAGACTACACGCTAGCCATGCGCCGCTCACCTGACGACATCCCCCTCATGACCCCCAACACCATCACCATGATCCCCAACACCATGCAGGGCCTCCAGTCGTTGCACAACTTCAACACCTTCCCCAGTAGTGCACAAAACAACACCCTGCCTCATACCCTGCCCCACCCACACTCACACTCCACCACCAGGGTATAGCCGGACGGATGGACGCTGAAACACACAGCACATGCCAGAGCTCACACCCAGCCCGATCAAACGGATGTGGAATAACTTCTACTCCTGTGAATATATTAAGGGAATAGGGATTTTGCTGGGACGGGAGAAGAATTTCATTTGATAGAAAAGAAGAAATTAGAAAAAAGTCAAACAAATatttcaaatgaaaaaataaacaaagagaaggatACTTTTTATTTCTGTTATTGAAACAGAACAAGGTGAACTTTTCCAGCTACAGATATCAACTTTGGAATTTTATAAACGATTGCTTGATCCTGTTATCTTGGAAAAGAGAAAAAACCTCAGTGGAGTTTCAGAGGAGTAGCAGGTCGCTTTGTAAATGAAAGAAAACATATTGTTTTCCTGAGGCATCAAACTGTAGAGTACTCTTTCTGGAGTCAAGGGGAGATGCAACCAATTTAGGCATGTGTTACTCTACAAGTAGAGGCAATGTAAGATATTACAAAAacaatctagagagagagggaaaaactcTTAAAGGTTATGCACAATGtaaacattttcaaaatgtcTTGGATTCTTCTCAGAAATTTATTTTTGGGGAACAGTTTTATTGTATAGAGCCTTTTTACATATCTAGATATGTACACAAAGCACCAATGCTGTTTAAGTCATTCTTGGGCGTCAATTCCGCAAATCTGCCAGCAGAACAAAAACGGAGGGATCCACTGGCTTTCTGGCAGATACAGCTTCATCACACAAGTGCTGTCTATACCGAGAGCtggaggacaaagaatactgGATATTTTTAGCACGAAGCGCATGACAATTTATCTGCTTGATGGCTGTTCTGCTGATTAAGTCATAATTAAGAAATAATGTCAGCCCCATTGGAATAGTTTGAAGGAACACTTCTGATTGGCTTACAAACCCACAAACCCACATGGGTTAAGGTCATGGTCATAATTGGGGACAGCAGGGGAGGGTGGGCTTAcggtaactacagtacatacacaatAGCTTGAGTGAACATGGGTATAAGGACTAGTTTTGTACAATGTGTGTTGGTACAACTTTTTGATAGTGGTGAATCACTCGCTGTTTGGGATCCCGATGGAGGGACGTTTCATTGTACTCTTTTGATCAATGTTATTTGCTATTACTTATTAGGTTACTTATCACTGCTCTTGACTAGTTCAAGGAAACTTTAACGTAGAAAAGTAATTACCTGCACTGTTAATTATTTTTGTTTTCCGTATGAATGATCCCTAAACACAAAGTGTGCCCAGGGCCATGAAGAAGGGAAGGTGAAGGCTAGGGAATAGTAGAACCTCTTGACTGCATACATTTTCTTTCCCCCTATTATCCTTTCATAGAGTATGTTCCGTAGCACTGTTTAAAGATTTATGCGTATAAATGTGTAATTGAAGCGAGGATGCCCTCCGCTGACATGTTGGATGTGCCTGCAACCCAACCGCAGGAGGAAGAGAGgcggggtggagagagagcgagagaacaggaGCTCCAGGAACTCCCATGGTACACCTCCTCCAGGGAGGAAACAGCATTCAGGCAGATTCACTGCAGTAGAACTGCTTAGAACCGTCTAGCCAGCACCCTTGTCTCTCACAGAGTAATTTCCATTtgcttctgttctgttctttttTATTTTCTACTGATGATGCTGTACTGTATTGTCTCAGATTTAGTTCTTGTTGTTCTGTAGCATGGTTTATTCGTGAACACACGCCTTGGTGTCACATTGTACAAGACTGTCAGCGTGTTACCATGACTGTCCCGCTAACCTCTAGGCAGCCCATAGTGAATGTTCCTCCCCTCACAATGCCAGAGTGCAACTTCCCTCTGCCAGCTGTCGCAGAACAGGGGAGTAACAATGTGTTATACAAATACATACCAGAGTGAATAGCTTAAAGGAGGAAGCCGCTGAGGGGAAAATAGTTCTCTAAACAGTCAAAAGCCCCACTGTACTCAAGCAGAGAGTGAAGACGGCACATACAGTAGTAAGAGGCGACACATAAGTAAGACAAAGTAGTAAGAAAAACACTTGTCCTCCCATTTTCCTGTCAATAAAGGCTGGATATAATGCGTCTGCTGAGGGGAGACAGTTGCTCTACAGTCCATCAAAGTAAGAACATACAATGGGACGTAGACAAGGTATAGCTTTTCTGGGGGAGGTGAAGGTAAATTATAGTCCACATTGCCCAAAACTAAAACGCAAGCAATTTCATCAGCCTGTATTGCAGTGGTGTGACCTCTAAACAATGCTCCTTACTGGAGAAATGACACAGGGGGAGAGAAACGCCCAGCGAATTAAACATGTAATTGCACTACGGACAAATGATCAAGTAATTGGAGAACAACATTGGAGAGTTGGCAGGAGAGGCGAATGCCACAGAAGCACTCACTCTACCACGCAGGATGAATGATTGGGGATTAAGAGGTGTGGGGAGAAAACTGTGCTCTGTTTCTGAATAACACAAAACCTCTGACACAGAGCCAGTCCTCAACAGGATGTTcccatggaccccccccccccccccccccccttcaccacTACGTACCCTACCGGGGAGGATTGGAAACAGAGTTAGAAATGGGACAACCGGTActaccctcctctccctacctccttccctcccaAAAAGGCTGATTCTGCACATCCCCTATATTCAATTACTGCAGGTATGGATATGGATAGTTGCTGCTCACTATACTCTTTCTCCACCATGCTCCCTCAGAGTggtgttaaaggcccagtgcagtcaaaaacgggGTTTCCTATGTAGGTTATATTAATAATGTGAAATTGTGagaattatgataatgcccttttagtgtaagagctgttttaaAAGACCGCCtgcaatgtcagcctgttttggtgggatagaGTTTTGGCCCGCCTGGTAACATATCCAGGCAGTAAattattaataaaccaataagAAATAGGGTTCAAAACATCTCTGCCAAATACCAGCTAGTTTTCAGTGTTCcccttcccactcagaccactcccaggcaGTTTATCTTGCTTGGGAaattgctaagaagctatttttgtttctttgtgttcaattaaaatggtcaaaatcacagtaaggtacttttaattgttacccatcaattatttgatattgagataaaaatggctgcactggacctttttaaaatgttatgaGCCAGTGGTGAAGGAGAGCTATAAGGGCTTTCCCTCCAAATTTGCATGCAGGACTTCCAGAATGCGAGAGAAAGAAGGGTTATACCTCAAACTATAATGTGACGATGTGGCTCAGGCCTTACCTGTGTTACCCAGTCCTGGACAGAGGAGGGTCAAGAATTGTGAATGAATGTAATGCGAAGAGTGCCATTTTCAAAAAAATGCTACACTACATCTTTGAGATCGATGAAGATCTTTTAAGATCTGTAAAAGGCTGTTCGCTCTTTCAAAATGTCTGTGAGAAGGGCGCTATGTGAGTGGGTATTTCAGTTGTATTGTAGATTTGTCACTTTCTTTCTGGTTAAAATAGTAATTACTTTTCTGGAGCACAATAAATTATTTTAATAAGCTGAATTAGCAGTGCTGCAACTCTTTATTTACCCGTTATGTTTGGTCAATAGTCTGATTTGATTGTAGAGTAGACACTCACAGTTAAAGAATGCTTGACAGAACTGAACTTCAAGCAACCATGTGGTCAGTCACTTGTCAGGTGGTCTGTCACACACTGTTGGTTTCCTTTGCTAGGGCTACAGTATATAGGACTTCGTGTTGATGTGTCCTAGACTTAAAACAGAATCTCAGAAATTTGACACGCAGGTTTTGACCGGTTCAGTTGTTGTTGTTAAGTGACAGAGATGAAAGATAAGTAATTTAATGGATTTTTACTGCTGTGCTTTCTGTGGTCTGTTGGGGCTGTGTCATGGAGGTGTCAATGCTATATTTTCCTCTTGTCTGTAAAAATCACAAGCATATTTGGCATTCCCTTTCATGCTAATCAGAAATGAATCTAGACTCGTCCACTTTGGAAATGGTGACATTTTACTTGTTGGCAACGATTAAAAACCAATTATTTCCCCACCTGACTTCGACATTTGAGAGCAGGCGAGAGATTCTGCCTTGAGACTGAGGGGAATAAACACAGAGCTGTTTACCGTGTGCGGTTTTAACCAAGGGCACAGATGCTCCTGCCAAAGAGCAGCTCAAATCCTGTTTGATAAGGGTTCGCCATTTCCCATTATGGAGTATTTCACAACATCAAACACTTTTGCCTCTGATAACCAGTCTTTCATTTACATGCACTGTTCGATCTATCTCATTCATCCCAGGGCCATTTCTTGCAAGCCTTTTATAACATTAGATAATTGCTATGTACTTAAGCAATGTTTTATAAAACTGTTGCGTAACTTTGTTCTACCTATAGTGCAGCAGCATATTTTGTGAAATAGGTTGATTATCCTGTCAAAAGTGCAATGCAATATGCTCTGAGAGTCGGGAAAACCATACCGAAGAGTTGACCTATACTAATCCTTATGTATGTTTCAGATTTGAATGACTGTGGGTAGGTAACTAGCATCACATTTATGTTTGAATTGTTGGCTACAAATGGATGTTCAACAGCAAATCATCTACACTTCGATCATGTCACCCCCCATTTTGGAGTACATGGGAGTCACTACAAATAAACATACACTTCTATGTGACCCTGTGTAACTGACTCTGCCAATAGACAATGTACTTTGCATTATTTGTGGTTTGTTTTCTTTGGAACCTTCAAAATAAAGTTAACAGCCTCCTCCAACCCAAACCATTTTATCTGTAATGGTAAGGCTTCTGTTTGCCTTCAGTGACTTAAGTTTGTGTGTGGACATCCATGGCTTTCATGAGCATTTTCAATATCATTAATAAATATTATCTTATTTTTTAACTTGCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2533120 lncRNA upstream 13766 23932600 ~ 23932873 (+) True G2214441
TU2533118 lncRNA upstream 16497 23929909 ~ 23930142 (+) True G2214439
TU2533094 lncRNA upstream 47310 23899125 ~ 23899329 (+) True G2214415
TU2532939 lncRNA upstream 154128 23792207 ~ 23792511 (+) True G2214263
TU2532628 lncRNA upstream 203125 23736016 ~ 23743514 (+) True LOC110521584
TU2533623 lncRNA downstream 13855 24247097 ~ 24247374 (+) True G2214927
TU2533631 lncRNA downstream 20284 24253526 ~ 24253793 (+) True G2214935
TU2533659 lncRNA downstream 45768 24279010 ~ 24324806 (+) True G2214963
TU2533791 lncRNA downstream 142393 24375635 ~ 24375912 (+) True G2215093
TU2533805 lncRNA downstream 150216 24383458 ~ 24383702 (+) True G2215107
XM_036968966.1 mRNA upstream 175894 23745350 ~ 23770745 (+) False LOC110521587
XR_005040986.1 mRNA downstream 560147 24793389 ~ 24802486 (+) True LOC118945828
XM_021599251.2 mRNA downstream 818450 25051692 ~ 25068480 (+) True LOC110521590
LOC110522765 mRNA downstream 864374 25097616 ~ 25108568 (+) False LOC110522765
XM_021599264.2 mRNA downstream 887406 25120648 ~ 25123578 (+) True LOC110521596
XM_021599263.2 mRNA downstream 890466 25123708 ~ 25144374 (+) False LOC110521595
TU2532504 other upstream 361059 23510592 ~ 23585580 (+) False LOC110521578
TU2532377 other upstream 597422 23348999 ~ 23349217 (+) True G2213751
TU2531112 other upstream 736123 23208850 ~ 23210516 (+) True G2212563
TU2531116 other upstream 736453 23208775 ~ 23210186 (+) False G2212563
TU2530986 other upstream 894781 23050488 ~ 23051858 (+) True G2212455
TU2534756 other downstream 797756 25030998 ~ 25113598 (+) False G2216024
TU2535138 other downstream 1131010 25364252 ~ 25373610 (+) True G2216357
TU2535277 other downstream 1334598 25567840 ~ 25588515 (+) True LOC110522768
TU2535314 other downstream 1454849 25688091 ~ 25812306 (+) True LOC110521611
TU2536029 other downstream 1893812 26127054 ~ 26133044 (+) True G2217159

Expression Profile


XM_021599245.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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XM_021599245.2 Expression in each Bioproject

Bar chart with 18 bars.
XM_021599245.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.