RNA id: XM_036969107.1


Basic Information

Item Value
RNA id XM_036969107.1
length 3265
RNA type mRNA
GC content 0.46
exon number 9
gene id oma1
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26477035 ~ 26501552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGACAGTCATTCTCGGAACATTGTCTTAGAGCATGCAGTTGCAGGGGGGACTATTATTTTAGACGCACAAGACAGTTCCTATGTGTTTGAGTTGCAGAGGACCGTCAAAGTAGATGAATAAAGGCTGTCACCTGGGCGTTTCAGGAAGTGGTATCTTCTCATTCGGGAACCATGGAGTTGTTGTGTGCCCGTCTCATGAGGAACCAACGCCGTTGCCTACCTGCCTACCTGTCTAGAAGCTTTCAAACCTCCCATTGCCGACAGAGACAATCAACAACCAGGAGGACATTACCTTCAACAGAACTCTACTCAACCAACACATGTCGGATTCTACGGCAGCCCGAAACCACAGACTCTGTTTGTCAACTTCAATTGAAGCCATCTTCATCTCAGAGACAACTTTTCTCATCTCAGAATGTAAGAACAGTACTTTTCCCAGTGGGGACACCTAGACCTGACCCTGCTGTCCACTGTCTCCCTGTTATATGGCTGTCTAAGCATGGACAGAACTTCTTCCATACCTCTGCTCCTCACCGCGCCCTGCCTGCGCCTCTCATATGGCTGGTACTCAAACCCCTGCAGAAGATAGTGGCTATTATACTGGGCAGgAGTATCAGGAAGTGGTGGTTGGCCCTCCCACCCAATAAGCAGCAGCTTGTGCGTCAGAAGGTCTGGCGTCGCCGTTGGCAGCTGGTGGCCGGGGGTATGGTTGCTATGGTGATCATGGCAAGTTTCTTCCTGACTCATCTGGACGAATCGCCCATCACGGGACGCACACGCCTCCTAGTGTTCAGTAGAGAGAACTACATGGAGCTGGCTGCAGTGACAGGAGATGGGTACATGGAGGAATTTGCTGAGTTGATGGTTTCAGAGAAGGACCCTCGTCACCAGGTGGTGGAGAGAGTGGTGGAGCACCTGGCCCAGAGGAACAAAGACATCCCAGAGGTCTCCTCTGTTCCATGGAGAGTCCACTTGGTCGACAGCCCTACCATCAACGCTTTCGTACTGCCTaatGGAAAGGTGTTTATGTTCACTGGGATGTTGGAGGCTGTTGCAGATGTTCACCAGCTCACCTTTATCCTGGGACATGAGATGGCCCACGCAGTGATGGGACACTCTgcaGAGCAGGCCAGTATGTCTCATGTGGTGGACTTCCTGTCTCTGATCCTGCTAACAGCCATCTGGGCCGTGTGTCCTCGAGACAGCCTGGCTGTACTGGGACAGTGGATACAGACTAAGCTCATACAGttctTGTTTGATCGTCCTTATAGCAGGAAGTTGGAGGCAGAAGCTGATCAGGTTGGACTCCAGCTGGCTGCCAAGgcATGTGCTGATGTGCGGGCAGGGCCAGTGTTCTGGCAGCAGATGGAAATCAGTGACCAGCTGAGAGGAGAACCTACAGTACCAGAGTGGCTCTCCACACACCCCTCTCACAGGAACAGAGTTACACAGCTGGACCGGCTGATCCCACAGtaCCTGGAGTTGAGGGAGAGCTGTTCCTGTCCTGCCCTCCCTGCTACAGACCCCAGAGCTGTCTTCGCTCAGAGTGTCAAAGTGCTGCTGGATGCTACTAGGGACCTGGAGGGAGAGGCGGGGAAGAGACTGAAACCACAAGCTCTGTCCCAGACCCCAACGTCAGACCACAGAAGGGCTCCACACACAGGGGGACTGGCTACTGCCCTGCTAGCCTCCTCAGCCACAGGCTCacctccagccctgaccctagaCACTGCTACCCACCTCTAACCCCCGGGCCACTACCCCCGCCCCCTGTCttcccagccccaaccccaggcCTAGTTCCAGTCAGTGATTGTAGCTCCTTGATTGCTAATTGACTGTTGTTTGTAAGGTCTTGTAAAATTGCAGTTGTCACCTGCTTCTGTGGAATTGCTGCAAAAAGGTTTCGAGTAGCGGTTCTGTTTACTGCGTGTAAGAGGGTACAGGGAGATGCTTTGAATGTGTAGTGTGAATACATAGAGATAGTATCCTGTTTTCATTGGAAGATTTCAAGTGGGGACATGCTGCACTCAATGGCCTAATGAGCATATAGAGTGAGGTCCAAAATGATTGACTCCCCTGATAAAGATGAGCagtaatgactgtataaaataaataaattcaaaaTTAAAATCAAAATGATTGACATCCCGGCCCTAAAGATTGACACCTCTAAAGTAAAGTAATCAAACGtgtgtatttggtcccatattcctatcacgcaatgactacatcaagcttgtgactctacaaacttgttggatgcatttgcagtttgtttttggTTGGGTTTAAGATGATTTAGAATATATTTCTCGACACTTCTACATTGATGTACattctaccatgattacggataatcctgaatgaattgtgaaaaatgatgagtgagaaagttagagggtcaaagatcataccccccaacacatgctaacctctcaccattaacaATAACAGAAGAGATTTAACAAATGATTGTTCAAACTATGGCTACTTGTCTTAGTGCATATGCAGATCTATACACACCTCACCGAAACTGACAACCAATAATTTAACAGGATTTCCGAAATCACGTTTGTAGGGAATATAAAAGTCCGAACATCTCAACTTTACAGTATATAAAAGAGTAAAAGACTAGATTGAGTTCCTCTCTTTCCAAAGACCACAACCTGGAAGTCAGTGATAAGTTGTTTGTCCCATCTCAGTGGTGTTGGTATAATACATGCTCATGTGATTACAAAGAATTGCCATATAATGTGTTTCTACATGGATTGTTGTACAGCCAAATTCCTCAACAGTAAGATAACGCGTGAAATTAACCTCCTTGATTGATCAAAACTGGGAACATATAAATAACGTTCTAACAACATTGAGGATATGTTGAGGAAACCATGTAAGAAtgtccttcagaaagtactcataccTCTGGACTTATTCACATTTTGGTTTTCTGGGTAGACCGTGTGTAGGCACTGTGTCCTGTATGTCACCTACTTTATCTACACTGTCGTGTCCATCCATCACCACCTGTTGCAATGTGTTTTTGTGGTAATGTGGCCATCAAGTTCATTTAAATGAGTTTTATGTCTCGCCCTGAAGGAATGGTATTGTGTTGTATTTTAGTGTCAAAGATCTTTGTGAAATCAtagaaatgtgtagttttgtacAAATCATGTATTGAACTAGCCAAAGAACATATTTTATATACTAGAATGTACATCTTAGAACCTGACAACCTGAAAATGAATGGGTTTTGAGGTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2536192 lncRNA upstream 78421 26373801 ~ 26398614 (+) False G2217304
TU2536193 lncRNA upstream 78421 26396793 ~ 26398614 (+) True G2217304
TU2536207 lncRNA upstream 85875 26390909 ~ 26391160 (+) True G2217315
TU2536191 lncRNA upstream 96241 26373801 ~ 26380794 (+) False G2217304
TU2536162 lncRNA upstream 152265 26318141 ~ 26324770 (+) True G2217277
TU2536382 lncRNA downstream 169951 26671503 ~ 26671724 (+) True G2217476
TU2536283 lncRNA downstream 220433 26721985 ~ 26747486 (+) True LOC110521633
TU2536408 lncRNA downstream 227982 26729534 ~ 26729883 (+) True G2217502
TU2536296 lncRNA downstream 247989 26749541 ~ 26757367 (+) True G2217392
TU2536424 lncRNA downstream 267843 26769395 ~ 26770266 (+) False G2217517
XM_021599312.2 mRNA upstream 19316 26446447 ~ 26457719 (+) True LOC110521629
LOC110522769 mRNA upstream 118544 26315974 ~ 26358491 (+) True LOC110522769
LOC110521625 mRNA upstream 162318 26312180 ~ 26314717 (+) False LOC110521625
XM_021599309.2 mRNA upstream 172315 26292253 ~ 26304720 (+) True LOC110521624
XM_036968689.1 mRNA downstream 194257 26695809 ~ 26795605 (+) False LOC110521633
XM_036968690.1 mRNA downstream 194257 26695809 ~ 26795605 (+) False LOC110521633
XM_036968683.1 mRNA downstream 194259 26695811 ~ 26795605 (+) False LOC110521633
XM_036968685.1 mRNA downstream 194259 26695811 ~ 26795605 (+) False LOC110521633
XM_036968687.1 mRNA downstream 194259 26695811 ~ 26795605 (+) False LOC110521633
TU2536029 other upstream 343991 26127054 ~ 26133044 (+) True G2217159
TU2535314 other upstream 664729 25688091 ~ 25812306 (+) True LOC110521611
TU2535277 other upstream 888520 25567840 ~ 25588515 (+) True LOC110522768
TU2535138 other upstream 1103425 25364252 ~ 25373610 (+) True G2216357
TU2534756 other upstream 1363437 25030998 ~ 25113598 (+) False G2216024
TU2536346 other downstream 105971 26607523 ~ 26607943 (+) True G2217442
TU2536280 other downstream 220433 26721985 ~ 26752464 (+) False LOC110521633
TU2537501 other downstream 723822 27225374 ~ 27226305 (+) True G2218483
TU2537836 other downstream 996325 27497877 ~ 27502680 (+) False LOC110521646
TU2538093 other downstream 1336356 27837908 ~ 27843698 (+) True LOC110521656

Expression Profile