RNA id: XM_036969176.1


Basic Information

Item Value
RNA id XM_036969176.1
length 10076
RNA type mRNA
GC content 0.52
exon number 55
gene id usp24
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27023938 ~ 27076744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTTTCGGTTCATATGGGTGGGTCAGGGTGCTGACGTTCTACGCAGGAAGTATCCAGTGAACCATCGTGACAGCCTGCGTGATTGTAAACATGGCGCCATGCACCGCTACAGGGCTGTGCTGTTTTACATCCCGTTTGTAGCTAGCCTGAGACACAAAACTTAACCATGGAGACAGAAGAGGAACAACATATGACAACTCTCCTCTGCATGGGTTTCCCAGATGCAGTGGCGATACGCAAGGCGCTACGCCTGGCGAAGAACGACATCAACGAGGCTGTTGCGCTCCTGACCAACGAAAGCCCCGGTCTTGGGTATGGATATGAGCCGATGGAGAGTGGCCCTGCCCCAGGCCCGAGTGGAGACGGGGAGTCCAGTGGGCGGACCGGGACTGGAGGGTTCGACCCACCTCCCGCATACCACGATGTGGTGGAGAGCGAGaGGAGTAATGATGAGAATGGGAATTGTTCAGGCAGCAGTATGGAGTTCCCCACCACTAACCTGTATGAACTGGAGAACAGAGTGTTCACTGACCACTGGTCAATCCCCTACAAGAGAGAGGAGTCACTGGGCAAATGTCTGATCGCAGCCACCTGCCTTGCCAAACACGgtCTGGCGGATGCGGATGAAAACTGTAAACAGTTTATGGACAGGTGTATGCACGAGGCCTTTAAAAAGCTCCTGACCAGTAGTGCGGTCCATAAGTGGGGGACAGAGATCCATGAGGGGATCTACAACATGTTGATGTTACTGGTGGAGCTGGTGGCTGAGAGAGTCAAACGGGACCCCATACCAGTTGGCGTGATGGGTGTACTGACTATTGCCTTCAACCCAGACAATGAGTACCACTTTAAGAACCGTATGAAGACGTGTCAGAGGAACTGGAGCGAGGTGTTTGGAGAGGAAGCCATGTTTGCTGTGTCACCTAGTAACAGCTACCAAAAGGAGCCTCATGGCTGGCTGGTAGATTTGGTCAATCGATttggagagatgggagggttcACTGCTATCCAGGCTAAACTCAATACACAGGAGATAGAGATTGGGtgtgtgtctgCTCTGGTCCAGCCTCTATCTGTGTGTGCAGAATACCTCAactccagcctggtgcagCCCATGTTGGATCCTGTTATCCATAAGATGATCACCTATGTTCAGAACCTGGAGGAGAAGGACCTGAAAGACAAGAGGCTGGTGAGCATCCCAGAACTGCTGTCGGCCATAAAGCTGCTGTGTATGAGGTTCCAGACCACCCTGGTCACTGTGGTGGACGACCTGCGCTTGGACACTCTGCTACGCATGCTGAAGACTCCTCACTTCTCTACCAAGATGAACTCCCTCAaagagGTGACTAAGCTGATTGAGGAGAGTACTGTGTCTAAGACGGTGAAGAATGCCATTGACACAGACAGACTGCTGGACTGGCTGGTGGAAAACTCTGTCCTCTCAATAGCACTGGAGGgtaACATAGACCAGGCCCAGTATTGTGATCGAATAAAAGGCATCATTGAATTGCTGGGCAGTAAACTGTCTCTGGACGAGCTCTCCAAGATCTGGATGATACAGGCAGGACAGTCGTCCACGGTGATTGAGAACATCCACACCATCATGGCTGCAGCTGCCGTCAAGTTCAACTTAGACCAGCTCAGCCACTTGTTTGTCCTTATACAGAAGAGCTGGGAGGTAGAGAGTGACCGTGTGAGGCAGAAGCTGCTCAGTCTGATTGGGAGGATCGGTAGAGAGGCCCGCTCTGAGGCTACCACGGGGAAGGTGCTGGAGGTGCTGTGGGAGTTAGCCCACCTGCCAACCCTGCCCACCTCCCTGGTACAGCAGGCGTCTGAGGAACACCTGGCCATCCTCACTGACGCGTACGCTGTGAAGGAGACTGTCAAACGCTGCTACATCATCAAATGTATAGAAGACATCAAGAagACTCAGACTGAGGAGGAGGGTAAAACCAGCGACATTCAGAGCTCGTTTCTTACTGGCTCCTggggcaagaagaaagccaaagAAAACTCATTGGCCAAAtcTTCACAGCAGGGCAGCCCCCAAGCGGTCTGGGTGGTTCCAGCTCTGCGGCAGCTCCATGAGATCACACGTTCCTTCATCAAACAGACCTACCAGAAACAggacaagCAGAGCATCATCCAGGACTTGAAGAAGAACTTTGAGATCGTCAAATTGATCACAGGATCTTTGGTGGTCTGTCATCGACTGGCTGTGTCTGCAGCTGGGAGCAATGGACTGGCCGGACACACACTCGTAGATGGACGATACACCTACCAGGAGTATCTAGACGGCCATCTGAGGTTCCTGGCCTTCTTCCTCCAGGAGGCCAGCCTCTACCTGGTCTGGAACAGAGCCAAAGAACTATGGGATTGCCTGGTCTCTGGGCCCGAAGTCTGCGAGCTGGACAGAGAGatgtgttttGAGTGGTTCACTAAGGGCCAGCATGATCTGGAGAGTGATGTTCAGCAGCAGCTCTTTAAAGAGAAGATCCTCAAACTGGAGCCCTACGAGATTACTATGAATGGCTTCAATCTGTTCAAGACCTTTTTTGAGAACGTCAACCTGTGTGACCATCGCTTGAAACGCCAGGGGACTCAACTGtgtgtggagcGGCTGGACCTGTCTGGGATGGACTTTATCTGGCGCATCGCCATGGAAACGCCTGACGAGGAGATCGCTAACGAGGCCATCCAGCTCATCATCACCTACAGCTACACCAACCTCAACCCAAAGAtgaagaaggatTCTGTGTCTTTACACAAGAAGTTCATTGCTGATTGTTACAAACGACTGGAGGCAGCCAGTTCAGCTCTAGGAGGCCCCACGTTGACTCATGCTGTTACCAGGGCAACCAAGATGCTGACGGCCACCGCCATGCCAACTGTTGCTACGTCGGTCCAATCACCTTCCAGGTCCACCAAACTGGTTATCATTGAGAGGCTGCTGCTATTGGCTGAGCGTTACGTCATCACTATCGAGgatctGTACTCTGTGCCTCGTACCATTCTACCTCACGGAGCGTCCTTCAACGGCCACCCTGTCTCTCTACACGTCACCTATGAGTCCACCAAAGACACCTTCACCCTGGAGGCCCACAGTAATGAAACTGTAGGCAGCATCCGATGGAAGATCGCCGAGCACCTCAGCTGTCCAGTCGACAATGTCCAAATCTTTGCCAATGACAgcgtgTTGACAATGAACCGGGACCAGAAGCTGCTGTCCCAGCTGGGGTTCAGTGATGAGCAGTCTCTGACAGTAAAGAGCTCTGGCACAGGGACACCCTCAGGTGGCAGCTCTGAATCCTCcgcctccgcctcctcctccagCTCTGCGGTCTTCAACTCAGCCTACGCTATGGAACAGGAGAAGTCCCTTCCAGGTGTTGTCATGGCGTTGGTGTGCAACGTGTTTGAGATGCTCTACCAGCTGGCCAACCTGGACGAACCCCGgacaACGCTTCGTGTGCGTAAGCTGCTGCTGCTGATCCCAACAGACCCAGAGGTTCAGGATGCTCTAGATAACTTTGTTCCCAAAGAGTCCAGTGTATGGAGTCACCAGAAGACGCTGTTCACCCTGGGTCAGGGGTCAGGCTCTCGGTCTCCGTCTCTGGGTTCTAAGCAGCAGCACCAGCCCAGTGCTGCCTCCATCTTGGAATCACTCTTCAGATCCTCTGCTCCCGGGATGTCCACCTTCAGAGTCCTCTACAACctagagGTGTTGAGTTCTAAGTTGATGCCAACCTCAGATGATGAGATGGCTAAGACCAGTGTCAAGTCTTTCTGTGAGAACTTCCTGAAAGCTGGAGGTCTCAGTTTGGTGGTGAACGTGATGCAGCGAGACTCTATTCCCTCTGAGGTGGACTATGAGACCAGACAGGGAGTCTACTCCATCTGTCTACAActggccagGTTCCTTTTGGTTGGCCAAAGTATGCCGTCGTTGCTGGATGATGATGTCATCCGAGAGGGCGACACGCTGTCTAGTCGGCCGTTCCGTAATGCGGGGCGACCGGGGAGACAGCTGTCGCTGTGTGGAACGCCAGAGAAGAGCTCCTATAGACAGATGTCTCTGTCTGAACGCTCCTCCATCAGAGTAGAGGAGATCATCCCTGCTGCACGCGTGGctatacagACGATGGAGGTGGGGGACTTCACCTCGACGTTGGCGTGCTTCATGCGTCTGACATGGGCAGCAGCCGCTGGCCGATTGGACCTCGTCGGCAGTCCACAGCCAATCAGACCTGAGCACAGCTCGCTCCTCCCACTTGGGGTCCGCACCCGTGTCAGCAGcactggaAGTAACTGCAGCTCCAGCAGTGAGGGCGAGGCGCCGCCCACAGCGTTGCATGCTGGGATATGTGTGAAGCAGCAGAGTGTTTCTATTAAAGACTGCATCATCGCTAGAGAGGCCCTGTCACTACTGGTCACCTGTCTACAGCTACGAacacagcagctaggcTCATTCTACATCCTCCCCTGTGTCAGCGACTTCATCATCGACATCCTGCTAGGATCAGCCAGTGGAGAGATCCGGCGCGTGGCATGTGACCAGCTGTACACTCTGAGCCAATCCGACAGCTCTGCGTTCCCTGAGATCGTCAAACCCAACGTGTTCCTGCTCCGAGTCGTCCTCGCCTCCCAGCTGCCTCTCTGGAGCCCCACGTCTGTCATGAGAGGAGTCAACCAGAGGTTGCTGTCACAGTGTACTGAGTACTTTGACCTGCGATGTCAACTACTGGATGACTTGACCAGTTCGGAGATGGAGGTGTTGTCAGTGAGTGCGGTGGCCATGTTGGAAGATGAGATCAGCTGGTTGGATAACTTTGAGCCCAGCTGGAGCTCTGAGATGGAGACCAGTGAGGCTGACAACATCCTGCAGGCTGGACACCTCCGCCTCATCAAAACACTACTGTCACTCTGTGGCACAGAGAAGGAACAACtggGTCACTCTCTGATCCAGCAGCTGTTAGATGACTTCCTCTTCCGAGCATCGCGCATCATCCTGAACACGTCTAACCCCGCCTCCAGCTCCCCCCCCAGCCACGACTTCTTCCCCAAGTGCAGTACGGCCAGCAGCAGACTGGCAGCCTACGAGGTGCTGGTGATGCTGGCAGACAGCTCTGTGGCCAACCTACAGCTCATCACCAGAGAGCTGCTGTCCATGCACCACCAGTCAGACCCCTCGCTCAGCAAGGAGTTTGACTTCCTCCCGCCGGTGGACAGTCGCTCTGTGTCGGGGTTCGTAGGGCTAAAGAACGGTGGAGCCACCTGCTATATGAATGCTGTGTTCCAGCAGCTGTACATGCAGCCTGGCCTGGCTGAGGCCTTTCTGTCTATAGAGGACGACACGGAGCAGCCAGACGAGAGTGTTTTCTGTCAGGTCCAGTCTCTGTTCGGACACCTGATGGAGAGCAAGCTGCAGTACTACGTCCCTGAGAACTTCTGGAAGATCTTTAAGATGTGGAATAAGGAGCTGTATGTACGAGAGCAACAGGATGCCTATGAGTTCTTCACTTCACTGGTGGACCAGTTGGACGAGCACCTTAAGAAAATCGGCCGTGAGCAGATCTTTAAGAACACTTTCCAGGGAATCTTCTCTGATCAGAAGATCTGCAAAGACTGTCCTCACCGATATGAGCGAGAGGAGACGTTTATGGCGCTGAACCTGGGTGTGACTTCCTGTCAGAGTCTGGAGATCTCATTGGACCAGTTCGTCAGGGGGGAGGTGCTGGAAGGAACCAACGCCTACTATTGCGAGAAGTGCaaggagaagcgTACCACAGTGAAGCGGACCTGCATAAAGTCCCTGCCCAGTGTTCTCTGTATCCATCTGATGCGCTTCGGATTCGACTGGGAGAGTGGACGCTCCATCAAATACGACGAGCAGATCAGGTTTCCCTGGGTGCTGAACATGGAGCCCTACACAGTGTCTGGCATGGCTCGTCAGGATGGGGGGGCGGAGGGGGGAGAGGGCCGGGGGGAGGCAGGTGGCTCACCCAGGAAGAAGGTCACTATCTCTGAGAACTACGAGCTGGTGGGAGTCGTAGTCCACAGCGGGCAGGCACACGCTGGACATTACTACTCCTTCATAAAGGACCGACGGGGAAGTGCTAGAGGAAGGTGGTATAAGTTTAATGACAATGTGGTCGAGGAGTTTGACATGAACGACGAGACACTGGAATACGAGTGCTTTGGAGGAGAGTACCGGCCTAAAGTCTACGATCAGTctaacCCCTACCCGGATGTGCGGCGGCGGTATTGGAACGCCTACATGTTGTTCTACCAGAGGATCAGTGACCAGAACTCTCCTGTTCTCCCTAAGAAGAGCAGAGTCAGCGTCATGAGGCAAGAGGCAGAAGACCTCACGCTTTCGGCACCCTCTAGCCCAGACGTCAGTCCCCAGTCATCCCCTCGCCCTGCCAGGGCCAACAATGACCGTCTCTCTGTCCTGACCCGCCTCGTACGGAAGGGAGAGAAGAAAGGACTGTTTGTGGAGAAGATGCCTGCTAGGATCTACCAGATGGTGAGAGATGAGAACCTGAAGTTTATGAAGAACAGAGATGTGTACAACAGCGACTACTTCAACTTCACTCTGTCACTGGCCTCCGTCAACGcgacaaAGCTGAAGCACCCAGCCTATCAGGCCATGGCCAGAGTCAGTCTCCAGCTAGCAGTCCACTTCCTGTTCCACACCTACCTCCACACCAAAAAGAAGCTGCGGGTGGACACAGAGGAGTGGATGACTACGGTGGAGGTGCTGCTGTCTAAAAGCAGTGAAGCCTGTCACTGGATGGCTCAGTACCTGGTGGGACCTGAGGGACGAGAGATCACCAAAGTGTGTCTGTTGGAGTGTGGGGTGAGGGAGGTGAGGGTCGTAGTGGCAGCCATCTTGGAGAAGACCTTAGAGAGTGCGCTCCACTTCGCTGACTCTGGATTGGACAGCCTGACCGACGCGCTCCTCTCCCTATTGGACAAAGATGTTCCTGAGAACGTCAAAAACTGCAACCAATACTTCAGCCTCTTCAGCAACTTTGCTCAGAGAGGCTCTGGTCCGTGCCATTTGTTGTTGAAACACTCAGCATATCGCAGGATGCTCATCTTTCTCCTCGGACCCAACAGACAGAACAACCAGAATCGGAGGTGGAGTCCAGCCCAGGCCAGAGAGTTCCTGCACCTCCACTCCACTCTGGCCCTGATGACTCTCCACTCAGAACtcaacacacagcacacacatgATCAAGGTGTGTGTAAGCTGATTGTGAGCAGTATCCCTGCCTCCTCCCGCCTCCTCCCCCTCAACGCTGACATCATGGCCTCGCTCTTCAGCCCCGAGGGACAGCCTTACCTGCTAGAGgTGATGTTTGCGGTGCGGGAGTTGTCAGGCCCTCTGACTGTGCTGATAGAGATGGTGACGTACTGTTCCTTCTGTAACGAACCCTTCTCCCTCGGAGTATTACAGCTGCTCAAGACCCAGTTGGAGACCGCTCCACCCCATGAGTTGAAGAACGTGTTCCAGCTGCTGCAAGAGCTGCTGGTGGTAGAGGACCCTCTCCAGACCCAGAGACTGAAGTACGCCTTTGAGTCAGAGAAAGGCCTGCTAGCATTGATGCACCAGAGTAACAACGTGGACAGCAGCCGCTGCTACCAGTGTGTCAAGTTCCTGGTTACCCTGGCACAGAAGTGTGCTCCTGCTAAGGACTATTTTAAAGATCTGTCTGGTCACTGGAGCTGGGCAGTGCAGTGGCTGCAGAAAAAGGCAAGCATCAAGCACACACaatttcagaTGTCAGAACACTACTGGACTCCTCAGAGCAACGTGTCCAATGAGACGTCCACAGCCAAAACGTTCCAGCGCACCATCTCAGCCCAGGACACGCTGGCCTATGCCACAGCACTGCTCAACGAGAAGGAGCCATCTGGCAGCAGCAACGGCTCTGACGGCAGCCCAGCCAACGAGAACGCAGACCGCAGCCTCCGACAGgGTTCCGAGTCTCCCATGATGCTCGGTGATTCAAAGAGTGATCTGGAGGATGTCGACCCTTAGCTTCTCCTACCAGACACAATCGCTCCAATTGAGAGAAGGCTCCAGACAACCAATCAAAAGACTGCTTTTCACCTGATTGGCCAGAGTTTTGAGGGAGAGGCCCGCTACAGCCTGGTTGGCGGAGCAACAAAGGATGCGATGCGTGAAATATCTTGAGTGACTTCCGGCCAGACTAATGTAATCAGAGCTGGAGGAGAGTTTTGAGACCAGACTAATGGAATCAGAGCTGGAGGAGAGTTTTGAGACCAGACTAATGGAATCAGAGCTGGAGGAGAGTTTAGAGACCAGACTAATGGGTTACAGTGCAGTTTATTCTTCTCTTACTGGCTGAGTCAGAAAGTTCACCCCTTTGCCTTTGTAGTTCACTACTTTGGGCCAAAGGTTCAGTGACGGCCAGTGGTACTAGACTGTATCGGCAAAAGGGTGTCATTTCAGATGTAGCCACACACAAGGAAGGGATGGGTTTGTTTTGTAAGTTGTTGCTCATATTTGGCAATGTAACTAAACAGACCATATTCATTATTGTAAAGATCTGTTCGATAGCTGTAATTTGAAATGTAAGATAATATTTTAAAGTCTCCTGTGCTCCACTctgtagatgtgtgtatgtgtgagcccGCGGTATGACCTGCTCTGgaagaacaccacacacacacacacacacacacacgtttaaccAGGGTTTTTATGTATGCACTTTATAGTCCACCCCAGTCTATAGTGGAGTAGAGCAATAGTGATCAGGTTCGCTAGAGCAGCTTAACCATCCTCAACACACGCACctgtctttcttttggtgttagCACTTCTTATCACACCAAACTTAGTTTTCAgcttgttacacacacacacacacagtacacacagccGATGCCACCGTAGAGAACACGCTATGGCTATGTCTGTTGCTCTGGTAACCACAGTGGTATCTAGGAATGGCGCAGTCTACGGAGGGTTCTAGAACACGAACGGAACCAAACCAACCAATCATTCAGcgctctctcatcccctccccttACAGCGAATCACAGCGCTGGATTTTAGGTATTttaatttctttgtttttggtttCTCCTGACGTCGCTGTACTTATGCCACCACCACtgccctgtgacacacacaccagagagaaGGTCATCGTGCCAACCAGAGGAGAGATCAGGAGCAAGTTTTACTTTGGGTGCCAATGAAATACACGCACACTGTCTTCCcctctttttttatttatatatgtacacacacaccatactctGCTTTATCATTATTATTTGGTgctgggtttttctttttttgccTTTTTATCTTTGTCTGTTCAGGTTTGCCTTTGGACACAGAGGGGCATAACCTCTGACCCCTAAGCTCTGATACCAAACCCCACCCCACCTGGACCTCTGACCACTAACCTCTTGACCTAACCCCTGGGAGAATTCTAGTGCCTTCATCTCCCaactcccctcacctctctgaaatcacattttattggtcacatacacgtgtttagcagatgtttttgtgggtgtagtgaaatgcaaagtttcctaagagctCGAAGCGAGGCAGCCCTCTGTCAGTGCCATTTTTAAGCATCCCTTGTCCCTCTCACACCAATCCCCTACCTGGCAACAGATGACTTGCTATAATGAACTGTGTGTATGTTACCATGCTGTGTATTGACCAGCAGACTGACCGGGCCCTCATCCTGGTCTTAGAAGGCTGTGTCAGAGCTTTCAGGTGTGTTCTAGGTCTGGTGTGCCAGTGACACAGCACTCCTCACTCAGAGCCTACTGCTCAGTTTGACCCTCAACAGCACCTGTAGTACTTCTCAGAACAGTACCATCTGTGGTGTGTAGTAAggggggagggtgggatggaattACAGATTGATATGGATCCAGATTTTTATTCTGTCTCATTCTGCTTTGAGCATCATTCATGTTGAAACCCAGTTTTCATTTGTACATCAGTTTGATTATGGGGAAATTTGATATAAAATAAACTGGAATGCCCAACCTTTTTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2537174 lncRNA upstream 51370 26972265 ~ 26972568 (+) True G2218192
TU2536517 lncRNA upstream 57793 26965652 ~ 26966145 (+) True G2217601
TU2536516 lncRNA upstream 59034 26964686 ~ 26964904 (+) True G2217600
TU2536514 lncRNA upstream 60171 26963475 ~ 26963767 (+) True G2217598
TU2536293 lncRNA upstream 72360 26951115 ~ 26951578 (+) True G2217389
TU2537309 lncRNA downstream 109831 27186575 ~ 27196779 (+) True G2218316
TU2537331 lncRNA downstream 133917 27210661 ~ 27210860 (+) True G2218332
TU2537500 lncRNA downstream 146126 27222870 ~ 27225123 (+) True G2218482
TU2537502 lncRNA downstream 149619 27226363 ~ 27227059 (+) True G2218484
TU2537525 lncRNA downstream 166848 27243592 ~ 27243792 (+) True G2218507
XM_036969231.1 mRNA upstream 117520 26847423 ~ 26906418 (+) False plpp3
XM_021599321.2 mRNA upstream 117520 26847426 ~ 26906418 (+) True plpp3
XM_021599316.2 mRNA upstream 201606 26796230 ~ 26822332 (+) False LOC110521632
XM_021599317.2 mRNA upstream 201606 26796233 ~ 26822332 (+) True LOC110521632
XM_021599318.2 mRNA upstream 210068 26796202 ~ 26813870 (+) False LOC110521632
XM_021599325.2 mRNA downstream 23073 27099817 ~ 27122682 (+) True dhcr24
XM_021599326.2 mRNA downstream 66261 27143005 ~ 27145888 (+) True LOC110521639
LOC110522772 mRNA downstream 70608 27147352 ~ 27156672 (+) True LOC110522772
XM_021599337.2 mRNA downstream 420584 27497328 ~ 27515550 (+) False LOC110521646
XM_021599338.2 mRNA downstream 420584 27497328 ~ 27515550 (+) False LOC110521646
TU2536280 other upstream 271474 26721985 ~ 26752464 (+) False LOC110521633
TU2536346 other upstream 415995 26607523 ~ 26607943 (+) True G2217442
TU2536029 other upstream 890894 26127054 ~ 26133044 (+) True G2217159
TU2535314 other upstream 1211632 25688091 ~ 25812306 (+) True LOC110521611
TU2535277 other upstream 1435423 25567840 ~ 25588515 (+) True LOC110522768
TU2537501 other downstream 148630 27225374 ~ 27226305 (+) True G2218483
TU2537836 other downstream 421133 27497877 ~ 27502680 (+) False LOC110521646
TU2538093 other downstream 761164 27837908 ~ 27843698 (+) True LOC110521656
TU2538335 other downstream 1217151 28293895 ~ 28307326 (+) True fip1l1a
TU2539163 other downstream 1470794 28547538 ~ 28548084 (+) True G2219989

Expression Profile