RNA id: XM_021599338.2


Basic Information

Item Value
RNA id XM_021599338.2
length 4468
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110521646
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27497328 ~ 27519290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCTTCCGCAGCAGTACAGCCGGTATCGAGAGGAGGGGGTATACGGTCGGTCAGGACTGGATTTCGGAGGATACAATATAAGGCTAACTTTAACATGAATAAATAGGGGCTTAGATTCATCGTGTTTAAAATAAGAAACACATATTAATTTTAGAAAACACCGACCAAACAGAGACAAACCCCTCATCTCTCGTAGACTATTTATCTGTCGACGCATCTATTCTGCACATTCTCCTATGTTGTTCTAGGCGGAGGAATGGACAACTGCGTTCATCCATATTTGTAGATAAATAAATGGGTGATTACGTTTTTGTTTATTACAGACAGCGACCATTGGACACCGCTCTACTCCTCGACGGACGCACTCTAATAtctgctcctcctcttctccgGTTTCCATCCGCCAGTTGCGCCCCGGCTCGCCCTTGGTCTCGCACAGTAGCGTCGCCGCCTTGTCCCCACTGTTCCTGTCAGTTGCTGCGCATCGGCAAAACATGCAGGATGAGCCTGTGGGGGTGACAACCGAACAACGACCCCCGCCAACAGAGGAAAAGTAGTACAGAAAAAACAACACAATCAATAAAGCCGGGATACAGCAACCAAATGAAACCAACAACCAGCTGGGAGCCCTCACTTCCAACTACAACCACCTGAACCAGAATCCAGATTTTGGTCAAGATCATTTTTGCCCTACACAGTCTATATTTGACCTTCAGCACGAGTGGAACATACATCAGCTAGCTGAGTTTGGATGCACTGAGTCGCCCCTACCCCAAGGAAAATTCAGTCACCTGCCGCTGAGGCAGCCTTTCACCGCTCAAGTCTCCACCAAACCAGCGTGCAGCACAGACTCCAGCCCCGGACGAATCAGCGGCTCGCCAGTGGGGGAGGTTAAAGCCGATGTGGAGACTGTCGCGTCGCCATCGCCCACTTCCGTAAATCCAAACAAGGTTCAGATACAAATGGACTCCCTCATCACCCACCATATAAATAACGGCAATGACAGTGGCACCGGCAATATGTTGGCCGGAAGTCTCGGGGGCGGTTTTCCAAACCTCCAGAACCAAGAGATGCAGAACCCGAGTGGTGGCTCAGCTTCACCTCCACTCCATGGATTCGGAACCCCGTGGTCGGTTCAGACCAGCTCCCCACCACCCGTCTCCAACTCGGCCAACCCTATCCACCACGCAAACGCGATTAATCAGATGGCTCATACCGAGCCAGACAACAGCTTTTATCCCGGTATCCCCTCCTCCATCAACCCAGCCTTCTTCCAGAGTTTTTCTCCGGTGTCGGCTAATCCGTGCCCCGGCATTAACGTGCAGGGCTTCACCAGTCCGTTCTCGCACCAGATCAACGCCCCTCAGCAGACGCAGCAGAGCCGCCGGTCCCCAGTCAGCCCCCAGATGCACCCCCAGCACCATCATCAGCACCAGCAAGGCGTCTTCCTGCAGCAGAGGAAcaactacaaccaccaccaccagcccatgGTGAAGCAATCTCCCTGGGGGGGCAGTCACCAGGGGAGTGGTTGGAGCTCTGGTGGTATGTCCTGGGGTCGGGACCACCGTCGTGGTGGAGGCATGGGCATCCCGGGCTCTGTCAGCCAGGTCTCCCCCATGAAAAAACCCTTCTCCAGTAACGTCATCGCACCGCCCAAGTTCCCCCGTTCCGCCGGCCCCATGGGCCCCAAGGCCTGGATTGAGGAGAACATGTTCCGaacagacagtaacagtaacacgcTTATGCCTCTCCAGgaTCGATCTAGAATGTACGACACTCTAAACATGCACTCACTGGAAAGCTCTCTGATTGACATCATGCGGGCGGAGCAGGATCCAATGAAGGgCCGTGTGGGATGCCCTCACCCTGGAGCCGACGGCCTGCTCATGCTCAATGGCCGCTCGTCCCTGTTCCCAATTGAAGACAGCCTCCTTGATGACGGGCACGGTAACCAGGGCGTCCCAGGGCTTGACACCAACTGTTACCCCCACCCAAACGGGGAGCGCATTGAGCGTTTCTCCCGCAAAGTGTTTGTGGGCGGCCTTCCCCCTGACATAGAtgaagatgagatcaCCAACAGTTTCCGTCGTTTTGGCCACCTGGTTGTGGACTGGCCACACAAGGCTGAGAGCAAATCCTACTTCCCCCCGAAAGGTTACGCCTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAGGCTCTGATCGAGGCCTGCATGGAGGAGGACGGCAAGCTCTACCTCTGTGTCTCCAGCCCCACCATCAAAGACAAGCCTGTCCAGATTCGTCCATGGAACCTGAGTGACAGTGACTTTGTGATGGACGGCTCTCAGGCTCTGGATCCTCGAAAGACCATCTTCGTAGGAGGCGTTCCACGCCCTCTCAgagcagtGGAGTTGGCCATGATTATGGACCGTCTCTATGGGGGGGTCTGCTATGCTGGCATCGACACCGATCCAGAGCTCAAGTACCCAAAAGGGGCGGGGCGCGTGGCCTTCTCCAATCAGCAGAGTTACATCGCTGCTATCAGCGCCAGATTCGTCCAGCTGCAACATGGAGACATTGACAAGCGGGTGGAGGTGAAGCCCTATGTTCTGGATGACCAGCTTTGTGATGAGTGCCAGGGGGCGCGTTGTGGGGGGAAGTTTGCCCCTTTCTTCTGCGCCAACGTGACCTGCCTGCAGTACTACTGTGAGTTCTGCTGGGCTAACATCCACTCCCGCGCCGGCCGAGAGTTCCACAAGCCGCTGGTCAAAGAGGGGGCTGACCGCCCAAGGCAAATTCACTTCCGCTGGAACTGAAGAGAAACGCGATCACATGTCACTATGGAGACATGGTCAGAAGCAACAGTCAAGGAAGAGAGACATCGCCAGGCAGGAAAAAGTGTCATCGCCCTGCTTCTTACCGTAAGCTATCAGTATAGAGTACATAACAGTATACAATATATCTATCTTTTGTAGCAGCCAAACATTACAAGCCTCAGTTTTTCACcaaacccccccctcccctttcacATCTCAGGCTCTAACAACTTTTTTTGTGGTACCTTCATGTTTTTTAAGAGGATATTTAAAAAGAGATAGAtgttttgtagtttttcaaattATTTTTATATGTGAGATTTAACGTAGATATGAGAATGTCTTTGCATGGGggtagcctgtctgtctgtctgtctgtctgtttgtctgctgcTAGCCACCCCCTAGTGGGTGTAGCGTGCCCTTGTTTCTGGGAAAACCTTGATTTGATAATCTGGACACCTGCCCCAGGTCATTTACCAAAGGTAGCAAAATGATAGGAAGCGTAAAAGGGATACACTTCTGCCACAAAACAAACTTTAATTGTTCATTGTTGCTATGTTCTCTTTTTCCTTATTGGGGAAGAGGTACAAAAATGATAGGGTTATTTTTGCTCTCATTTTGACCTGAGAAAATACAACTATAAATATGAATCTGGTTTGTATTAACTCTATTTAACATTTTGAATCACAAGCTATATTAGAAGCTTTGCTGCTATACATAATATATGAATAGATGTATAGGTGTTATATATTAACAGCATCTGTAAACCGTAAtcttgaaaatgaaatgcagtcTGCACTCAAACACTCATTGCCATGGAAGAATAGAATGTGAAAATTAAAATGCATGTTTGTGCATGCAGGATAGACTTAACCAACATGCAGGATAGACTTAACCAACATGCAGGATAGACTTAACCAACATGCAGGAAAGACATAACCAACACATACAGGATAGACTTAACCAACATGCAGGAAAGACATAACCAACACATGCAGGATAGACTTAACCAACATGCAGGATAGACTTAACCAACATGCAGGATAGACTTAACCAACATGCAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACACATGCAGGAAAGACTTAACCAACATGCAGGAAAGACTTAACCAACACATACAGGATAGACTTAACCAACATGCAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACATGCAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACATGCAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACACATGCAGGAAAGACTTAACCAACACATACAGGATAGACTTAACCAACACATGCAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACACATGCAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACATGCAGGAAAGACATAACCAACACATACAGGATAGACTTAACCAACACATGCAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACATGCAGGAAAGACTTAACCAACACATGCAGGAAACAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2537571 lncRNA upstream 218879 27278240 ~ 27278449 (+) True G2218553
TU2537525 lncRNA upstream 253536 27243592 ~ 27243792 (+) True G2218507
TU2537502 lncRNA upstream 270269 27226363 ~ 27227059 (+) True G2218484
TU2537500 lncRNA upstream 272205 27222870 ~ 27225123 (+) True G2218482
TU2537331 lncRNA upstream 286468 27210661 ~ 27210860 (+) True G2218332
TU2537878 lncRNA downstream 48261 27563811 ~ 27565177 (+) True G2218823
TU2537968 lncRNA downstream 174762 27690312 ~ 27692184 (+) True G2218907
TU2538024 lncRNA downstream 232523 27748073 ~ 27754271 (+) True G2218953
TU2538079 lncRNA downstream 294114 27809664 ~ 27810344 (+) True G2219002
TU2538080 lncRNA downstream 296014 27811564 ~ 27811802 (+) True G2219003
LOC110522772 mRNA upstream 340656 27147352 ~ 27156672 (+) True LOC110522772
XM_021599326.2 mRNA upstream 351440 27143005 ~ 27145888 (+) True LOC110521639
XM_021599325.2 mRNA upstream 374646 27099817 ~ 27122682 (+) True dhcr24
XM_036969178.1 mRNA upstream 420584 27023939 ~ 27076744 (+) False usp24
XM_021599339.2 mRNA downstream 6055 27521605 ~ 27537511 (+) False LOC110521647
XM_021599340.2 mRNA downstream 14310 27529860 ~ 27537511 (+) True LOC110521647
LOC110522774 mRNA downstream 24470 27540020 ~ 27540985 (+) True LOC110522774
XM_036968587.1 mRNA downstream 52267 27567817 ~ 27571386 (+) True LOC118945773
XR_005040961.1 mRNA downstream 56164 27571714 ~ 27581860 (+) True LOC118945810
TU2537501 other upstream 271023 27225374 ~ 27226305 (+) True G2218483
TU2536280 other upstream 744864 26721985 ~ 26752464 (+) False LOC110521633
TU2536346 other upstream 889385 26607523 ~ 26607943 (+) True G2217442
TU2536029 other upstream 1364284 26127054 ~ 26133044 (+) True G2217159
TU2535314 other upstream 1685022 25688091 ~ 25812306 (+) True LOC110521611
TU2538093 other downstream 322358 27837908 ~ 27843698 (+) True LOC110521656
TU2538335 other downstream 778345 28293895 ~ 28307326 (+) True fip1l1a
TU2539163 other downstream 1031988 28547538 ~ 28548084 (+) True G2219989
TU2539165 other downstream 1033479 28549029 ~ 28549478 (+) True G2219991
TU2539452 other downstream 1506036 29021586 ~ 29021882 (+) True G2220253

Expression Profile