RNA id: TU2537832



Basic Information


Item Value
RNA id TU2537832
length 3947
lncRNA type sense_over
GC content 0.39
exon number 4
gene id LOC110521646
representative True

Chromosome Information


Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27497328 ~ 27519290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAGCTATATTAGAAGCTTTGCTGCTATACATAATATATGAATAGATGTATAGGTGTTATATATTAACAGCATCTGTAAACCGTAAtcttgaaaatgaaatgcagtcTGCACTCAAACACTCATTGCCATGGAAGAATAGAATGTGAAAATTAAAATGCATGTTTGTGCATGCAGGATAGACTTAACCAACATGCAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACACATGCAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACACATGCAGGAAAGACTTAACCAACACATACAGGATAGACTTAACCAACACATGCAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACACATGCAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACATGCAGGAAAGACATAACCAACACATACAGGATAGACTTAACCAACACATGCAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACACATACAGGATAGACTTAACCAACATGCAGGAAAGACTTAACCAACACATGCAGGAAACAGATATCATATAACAGATATCATATAACAGATATCATATAACAAATATCATATAACAGATATCATACATAAACAGATATCATATAACATATATCATATAACAGATATCATATAACAGATATCATACATAAACAGATATCACATAACAGATATCATATAACAGATATCATACATAAACAGATATCATATAACAGATATCATATAGCAGATATCATACATAAACAGATATCATAACAGATATCATATAGCAGATATCATACATAAACAGATATCATATAACAGATATCATACATAAACAGATATCATATAACAGATATCATATAGCAGATATCATACATAAACAGATATCATATAACAGATATCATACATAAACAGATATCATATAACAGATATCATACATAAACAGATATCATATAACAGATATCATACATAAACAGATATCATATGACAGAAACCACTAAATCCTACTGTGAGTAGCATGTACAAAAACAATAGAAGCCAGGTGTTCAAAATACCATGGCGATcaagaaaaatacattaaaactacTTACTTAAACATCTTGCATGCATTGATGTTGATACGTTGTTTGATCCGACATACTTATTCAAAAAAATGCTATATTGGTTCTAGACTAGTGGATGCCACCATTTTGTGACGTGGTGGTTTGTGAGGAGTgaagaagctgttgagaagctgAGTGGTGTTTAGTCAGTGGCTAGTGTCgtctctgtgctgtctgtgtgggtcttGTTAGTGTGTGGACAGAGGTTTTAGTTTAGTAACAATGTAGATATACGAGAATGAGAACATCACAATATTTTGCCTtcacccctcctttcctccccaccTTTTTATAGTTACTGTGGTTACTCTAATGTAGCAAAGCACTTAAAagaccaaaaacacacacagtagcCTGGCTGGATCAGCTAACTACAGGCATAGGACTGggagatgtgtgtttgtgtggtgtagtGTGCCATGTGTTACACTAGTTGGCTAATCCATACCGCTGTTCAAATGTTGTCATGGAGAAGGATTCGTAAGGAAGCATCTGTCCAATATTTGTTCCTGGGTCGTGTTATCAGGCTATGAATTTTGCAGTTGGGTGAAACTGTTCTATAAGAAATCTGTCTCTCATATGTACAGTAATTACTAGTTATGAGACTCCAGACCTATAGAAAGTGGCCAAGTTCTATGTCCTGCTAGTGAAAGATGACAAAGACACACCCCTTCACtgataataataaaacatttggGTCTGCAGAATACATATTAACTGTGTTCTTTGTTTTCTCTAACTGTGACCCTGTGAGGACATCGCTCTTAAATACTTTTCAGGGACAATCCCTCTCTCTGTGAGTAATGACCTGCTGGTGCATTAGCATATCAGCTGTATGGTACTGTACATGTCTGTATCTCTACAGGGTAATATCCCTGTTATTCCTGTGTCATAGTGTTTCTGTATTTCATGCCCTGGTGTGGAGTCCTTGGTATCCGTAGGTCAGGTGTCAAGTGTTGCTGTTACTACCCTATGGGGATACGATTTTATGTTCGTTTATTCACATACTGTATTATTAGAACATTCATTTGTTTAACGTCTTGACCTTGTGACCCCCTCCCTGTCCCAAGCATCTCTAATCACTTTTGATAATATATTATGCACTTCCCTTTCTAtatttccctctcttttcccttgGATGGTTTGATTCTTGACTCATTTTCACCCTAGCAGTTAGATAGCTGATACAATGCGGACGTGGTTTGGGTAACAACCTATTTTGCTCCATTTCATTACTCATGAACAATTCTGTTCTAACAAACTTCTACCTATTTATAATTCTATCAGATGATTTATTGAATACAATTTTTTCATAATTGTGTGCGGAGGCGGTGGTCTTAGGTTTTTCTATGTGAAGGAAGTAGTTATCTAATACGTTCTAATATATTCAAACTGAGTCCCGTTGTTACAGGGAATGTGTTTCTCTCTGTAAATTAACAGGGTGCTGAGCTATGATGACTGGCTCTACAAAATGGTAGCCAAAAAATGATGAACAACAGCTTCAAAGCAAATGAGGGATCCTTTAGCCACCAGCCACCCTACTTGTACTCGAGAGTTCTTGTACGGCGTTCGTGGTGTGGTTGGTGTTCtgctcagaacagaacagagctcgCGTTTACATTGTCACCATTGCCCTGTAACACTTGACTCCTTGTGCTGTTTGTTGAGTCATTTGAGTAATATGTTGAACACTGTTActttgtacagtgcctttggaaagtattcagaccccttgacttttttcacgttttattatgttacagccttattctaaaattgattaaattaatacaaattctcagcaatctacaaaaaataccccataatgacaaagcaaaaacaggtttttagacattttatttgcataagtattcagacccttttgctatgacattcgaaattgagctcaggtgcatcctgtctccattgatcattcttgagatgtttctacaacatgattgttggagtccacctgcggtaaattcaattgattttacATGATTTGGATAGGCACacacaatgcatgtcagagcaaaaaccaagccaagaggtcgaaggaattttccgtagagctgcgagacaggattgtgtcgaggcacagatctggggaagggtaccaaaacatttctgcagcattgaaggtccccaattacacagtggcctccatcattcttaaatggaagaagtttggaaccaccaagactcttcatagagctggccacccggccaaactgagcaattgggggagggaggtgaccaagaatccagtggtcactctgacagatctctagagttcatctgtggagtttgcagaaccttccagaaggacaaccatctctgcagcactccaccaatcaggcctttatggtagagtagccagacggaagccactcctcagtaaaaggcacatgacagtccacttggagtttgccaaaaacctgcttcagagtgctcaagacctcagactggggcgaaggttcatcttccaacaggacaacgaccctaagcacacagccaagacaacgcaggagtggcccagccagagcccagacttgaacccgaccgaacatctctggagagacctgtaaatagctatgcagcaacactccccatccaacctgacatagtttgagaagatctgcagagaagaatgggagcaactccccaaatacaggtgtgccaagcttgtagtgtcatacccaagaagatccgatgctgtaattgctgccaaaagttcTTCAACAAGTAGGTTCtta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2537851 lncRNA upstream 13418 27500303 ~ 27501159 (+) True G2218801
TU2537571 lncRNA upstream 236128 27278240 ~ 27278449 (+) True G2218553
TU2537525 lncRNA upstream 270785 27243592 ~ 27243792 (+) True G2218507
TU2537502 lncRNA upstream 287518 27226363 ~ 27227059 (+) True G2218484
TU2537500 lncRNA upstream 289454 27222870 ~ 27225123 (+) True G2218482
TU2537878 lncRNA downstream 44521 27563811 ~ 27565177 (+) True G2218823
TU2537968 lncRNA downstream 171022 27690312 ~ 27692184 (+) True G2218907
TU2538024 lncRNA downstream 228783 27748073 ~ 27754271 (+) True G2218953
TU2538079 lncRNA downstream 290374 27809664 ~ 27810344 (+) True G2219002
TU2538080 lncRNA downstream 292274 27811564 ~ 27811802 (+) True G2219003
LOC110522772 mRNA upstream 357905 27147352 ~ 27156672 (+) True LOC110522772
XM_021599326.2 mRNA upstream 368689 27143005 ~ 27145888 (+) True LOC110521639
XM_021599325.2 mRNA upstream 391895 27099817 ~ 27122682 (+) True dhcr24
XM_036969178.1 mRNA upstream 437833 27023939 ~ 27076744 (+) False usp24
XM_021599339.2 mRNA downstream 2315 27521605 ~ 27537511 (+) False LOC110521647
XM_021599340.2 mRNA downstream 10570 27529860 ~ 27537511 (+) True LOC110521647
LOC110522774 mRNA downstream 20730 27540020 ~ 27540985 (+) True LOC110522774
XM_036968587.1 mRNA downstream 48527 27567817 ~ 27571386 (+) True LOC118945773
XR_005040961.1 mRNA downstream 52424 27571714 ~ 27581860 (+) True LOC118945810
TU2537836 other upstream 11897 27497877 ~ 27502680 (+) False LOC110521646
TU2537501 other upstream 288272 27225374 ~ 27226305 (+) True G2218483
TU2536280 other upstream 762113 26721985 ~ 26752464 (+) False LOC110521633
TU2536346 other upstream 906634 26607523 ~ 26607943 (+) True G2217442
TU2536029 other upstream 1381533 26127054 ~ 26133044 (+) True G2217159
TU2538093 other downstream 318618 27837908 ~ 27843698 (+) True LOC110521656
TU2538335 other downstream 774605 28293895 ~ 28307326 (+) True fip1l1a
TU2539163 other downstream 1028248 28547538 ~ 28548084 (+) True G2219989
TU2539165 other downstream 1029739 28549029 ~ 28549478 (+) True G2219991
TU2539452 other downstream 1502296 29021586 ~ 29021882 (+) True G2220253

Expression Profile