RNA id: LOC110522774



Basic Information


Item Value
RNA id LOC110522774
length 598
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC110522774
representative True

Chromosome Information


Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27540020 ~ 27540985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGCGACAGTGGCTGCTGCAGCTGTTATGAACTTCAAGTCCTTTGCGGACTTCAGTCGTATTCGTCTGAACAGGTTGCAGAGGGAGGATCCAGAGCTGTTGCGGGCCTGCCATGAGAGTGGTGTTCAGTACAAGGACCTTGATCTGCCCAGAAAACTCACTTTGTGGAGAGAAGAAAGAACCATGCTTTCACAGTGGCCAGTTATTTTAGTGAAGAGAATGTGAAGAGAATGTGACTAAGAAGGTGACTAAGAAGGTGACCAGCGTTGTGGAGAGGGTGACATCTGACTACCACTCTGGTTCATCCTCAGATGAGGATAGTAGTCTCAGCGAAACCTGTCTTCCCCCTACCTTCCCCCAAAATTGCCACACATAGCAGGTAATCTACCCAGCTGCTTCTTTGTGGAGTCCTCCAGTGCCCAAGCAGGAGAAGATGGGGCCTGGTAAAGCACATAACGGCCTTCCATGTCCTCCTCACTATGGCTTCAGACCCCAAGGCAGAACGACCCAGCCCTTCAGACACAACGGCTGGGCTCTGCCTGGCCAGAGAGGGGGGCACGGATACTGGGGTGGCACTCCAGGCCAGGCTTACTGTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2537832 lncRNA upstream 20730 27514577 ~ 27519290 (+) True LOC110521646
TU2537851 lncRNA upstream 38861 27500303 ~ 27501159 (+) True G2218801
TU2537571 lncRNA upstream 261571 27278240 ~ 27278449 (+) True G2218553
TU2537525 lncRNA upstream 296228 27243592 ~ 27243792 (+) True G2218507
TU2537502 lncRNA upstream 312961 27226363 ~ 27227059 (+) True G2218484
TU2537878 lncRNA downstream 22826 27563811 ~ 27565177 (+) True G2218823
TU2537968 lncRNA downstream 149327 27690312 ~ 27692184 (+) True G2218907
TU2538024 lncRNA downstream 207088 27748073 ~ 27754271 (+) True G2218953
TU2538079 lncRNA downstream 268679 27809664 ~ 27810344 (+) True G2219002
TU2538080 lncRNA downstream 270579 27811564 ~ 27811802 (+) True G2219003
XM_021599339.2 mRNA upstream 2509 27521605 ~ 27537511 (+) False LOC110521647
XM_021599340.2 mRNA upstream 2509 27529860 ~ 27537511 (+) True LOC110521647
XM_021599337.2 mRNA upstream 24470 27497328 ~ 27515550 (+) False LOC110521646
XM_021599338.2 mRNA upstream 24470 27497328 ~ 27515550 (+) False LOC110521646
LOC110522772 mRNA upstream 383348 27147352 ~ 27156672 (+) True LOC110522772
XM_036968587.1 mRNA downstream 26832 27567817 ~ 27571386 (+) True LOC118945773
XR_005040961.1 mRNA downstream 30729 27571714 ~ 27581860 (+) True LOC118945810
XM_036968864.1 mRNA downstream 67459 27608444 ~ 27662348 (+) True LOC110521651
XM_021599355.2 mRNA downstream 131935 27672920 ~ 27685270 (+) True LOC110521654
LOC110522775 mRNA downstream 260309 27801294 ~ 27822868 (+) True LOC110522775
TU2537836 other upstream 37340 27497877 ~ 27502680 (+) False LOC110521646
TU2537501 other upstream 313715 27225374 ~ 27226305 (+) True G2218483
TU2536280 other upstream 787556 26721985 ~ 26752464 (+) False LOC110521633
TU2536346 other upstream 932077 26607523 ~ 26607943 (+) True G2217442
TU2536029 other upstream 1406976 26127054 ~ 26133044 (+) True G2217159
TU2538093 other downstream 296923 27837908 ~ 27843698 (+) True LOC110521656
TU2538335 other downstream 752910 28293895 ~ 28307326 (+) True fip1l1a
TU2539163 other downstream 1006553 28547538 ~ 28548084 (+) True G2219989
TU2539165 other downstream 1008044 28549029 ~ 28549478 (+) True G2219991
TU2539452 other downstream 1480601 29021586 ~ 29021882 (+) True G2220253

Expression Profile