RNA id: XR_005040961.1


Basic Information

Item Value
RNA id XR_005040961.1
length 2591
RNA type mRNA
GC content 0.53
exon number 10
gene id LOC118945810
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27571714 ~ 27581860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACATGGGTACGGTCACCCTAAGCTTTTCCCAGCTATTATTGAGAGAATACCTTCATtatgcaaaaaataataatcttacACAAAGTTGTTTTTCTTCTCTCATTTGTCTCCCTGCCAGCACCTGGCAGAGCTTTCCGTTGAAAGAGGACTCGCCTAAAACAGTTTGGTTGTTTGGTTTTAATGGAGATTTCAGAGTGAGAAGGAGATTCCCTGTAGACTGAATGAGAACCTGAAGGCCCAGAGCCCTGAGGAGGAGGTGTCAGCCACAGCCCCAGAAGGACAGTGCCCCGCCCCCCAGCAGAGCCAGCCTATCACAGAGGAGAGACCGTCCTTTGGTGGGAACAGGAAGAAGTAGGAGGCTGGAGCTCCGTCGATTCTCTCTGTAGCCCAGCAGACACCAGAATAGAACTGTATCAGAACGACTGGCTCGGTCTCCAGAAGAGAGATTGTCCTCTGGTGGGGACAGGAAGAAATGGGAGGCTGGACCTCCACCCATTCTCTCCATAGCTCAGCAGACCATAGAGGACCGCTGAGCAGACAGTGGGCGAGGTCATTCGGATGGACGATGTCCCCAGAAAAGCGTTTCTCAGCTGCTGGGGAACGTCGGCATCTGTGAAGAGAAACTCACCGATCCAGCAGACTTGGAGTCAGTGGTCCTGGAGGCGGGCAAAAAGCGGGCTGCAAATCCCCCAGCTGGCGTAGAGCAGGCATGGGAGGAACAGGCCCTGCTGCTGAGGCCACCAGGGGGCAGAGTAACACCAGCAGAAACCAAGGGGTTTGGGGAGAGGGCAGAGAAATAACCCAAATCGTCAGCTATAGTGCCAGTGTGTGAGAAACCTCTGTTTGTGAAGCCGTGCTCCTCGCCGGCCCACCGTCGTACTGCAACTCTGGTTCTTATGTCAGCCCAGTCGTCCATGGAGGACTCGTCCTCCTCTCTGGCCTCACGCTCTCGCTCAGTCTCTCCGCTCCGCTCACAACAGCGCCCTCTTCATCGGTTCGAAGCCTCcgttgatgtacaagtacaccctctGGACAGGACGCTGGTCTATCGCAAGAAATCAAGATTGTGTTTAGAGatGCTGCGGACCTGTTCTCTCCTAGACCTCAGCAGACTGTTCAGCTCATTACAGGAGGCAGGAGGGGGCAACGGGGCTGTTGCccccgacaacaacaacaacctggcGATAGAGACAATGGAGGAAGAAGAGGCCAAGGAGGATGAACAATCAGAGAATGAGGAGATGATGACCTGAGGGAGTTAAGGGCCTCCATAGAAAGACTCCTACATGAGGAGCGCaacgaggaagaggagaggggttaTGAAGATGGTAACGGGAGCCCtccagaggaagagggaggagattGCTTCAACGGCAACCCTGCtttggatgatgatgatggtgatgatgatgatgacgattcTGCTGAGGTAGAGGAGGAGCTGAACGGGATggctgaggatgaggaggagagttcTAATTGGATTCCAGGTGATGAGGAGGCAGGACACATACTCACCAACGGACTGGAAGAAAGGAGCACCACAGCAGTGAGAGCCAGCTCCATGAAGAATGGAAGACGAGGAGCACCACAGCAGTGAGAGCCAGCTCCATGAAGAATGGAAGACGAGGAGCACCACAGCAGTGAGCGCCAGCTCCATGAAGAATGGAAGAAGAGGAGCACCACAGCAGTGAGAGCCAGCTCCATGAAGAATGGAAGAAGAGGAGCACCACAGCAGTGAGAGCCAGCTCCATGAAGAATGGAAGAAGAGGAGCACTACAGCAGTGAGAGCCAGCTCCATGAAGAATGGAAGAAGAGGAGCACCACAGCAGTGAGAGCCAGCTCCATGAAGAATGGAAGAAGAGGGGCACCACAGCAGTGAGAGCCAACTCCATGAAGAATGGAAGAAGAGGAGCACCACAGCAGTGAGAGCCAACTCCATGAAGAATGGAAGAAGAGGAGCACAACAGCAGTGAGAGCCTTTTCCATGGGGAATGGCAATCAGACGacagtggtgaggaggaggatgttgaaGCTGAACAGCAGGACAGCATCTACAGCCGTCTGGAGGAGCTGCGTTTGAACCTGGAGCAGGAGATAGGCTTTGAGAACTTTATAGAGGCCTACAACACGATCAAGGATGGGACATGCTGACCCTCTACCCTCATGATGTCATTTATGATCTATCGTCCAGAAATGACGGATGGTAATTGAATGTTCATGTCATTGTACCATTAAAGGCAATTCATGAGGTTGAGGATGAGAACATCAACATGTTATTGAACAACATCCTGGGGACTGAGCACCAGCACCTGTACCCCAACATCCTTCACCTGGTCATGGCTGATGGAGCCTACCAAGAGGATAATGATGAAATTGGGATGTGTGTCCAAGCCGCTGGCAACTTTTGACAATCTACTAGCCATCCGATGTCTTCCGATGGTTGGAGAGGGGTTGGAGCCAGGCCCAGGCACACTtgcatgggtgcacctcagccacgggtgcacctcagccacgctcaaggtactaaacgatatcataaccgccattgataaaagacagtactgtgcagccgtcttcatcgacctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2537878 lncRNA upstream 6537 27563811 ~ 27565177 (+) True G2218823
TU2537832 lncRNA upstream 52424 27514577 ~ 27519290 (+) True LOC110521646
TU2537851 lncRNA upstream 70555 27500303 ~ 27501159 (+) True G2218801
TU2537571 lncRNA upstream 293265 27278240 ~ 27278449 (+) True G2218553
TU2537525 lncRNA upstream 327922 27243592 ~ 27243792 (+) True G2218507
TU2537968 lncRNA downstream 108452 27690312 ~ 27692184 (+) True G2218907
TU2538024 lncRNA downstream 166213 27748073 ~ 27754271 (+) True G2218953
TU2538079 lncRNA downstream 227804 27809664 ~ 27810344 (+) True G2219002
TU2538080 lncRNA downstream 229704 27811564 ~ 27811802 (+) True G2219003
TU2538082 lncRNA downstream 233662 27815522 ~ 27815767 (+) True G2219005
XM_036968587.1 mRNA upstream 328 27567817 ~ 27571386 (+) True LOC118945773
LOC110522774 mRNA upstream 30729 27540020 ~ 27540985 (+) True LOC110522774
XM_021599339.2 mRNA upstream 34203 27521605 ~ 27537511 (+) False LOC110521647
XM_021599340.2 mRNA upstream 34203 27529860 ~ 27537511 (+) True LOC110521647
XM_021599337.2 mRNA upstream 56164 27497328 ~ 27515550 (+) False LOC110521646
XM_036968864.1 mRNA downstream 26584 27608444 ~ 27662348 (+) True LOC110521651
XM_021599355.2 mRNA downstream 91060 27672920 ~ 27685270 (+) True LOC110521654
LOC110522775 mRNA downstream 219434 27801294 ~ 27822868 (+) True LOC110522775
XM_021599356.2 mRNA downstream 242054 27823914 ~ 27844041 (+) False LOC110521656
XM_036968756.1 mRNA downstream 242054 27823914 ~ 27844041 (+) False LOC110521656
TU2537836 other upstream 69034 27497877 ~ 27502680 (+) False LOC110521646
TU2537501 other upstream 345409 27225374 ~ 27226305 (+) True G2218483
TU2536280 other upstream 819250 26721985 ~ 26752464 (+) False LOC110521633
TU2536346 other upstream 963771 26607523 ~ 26607943 (+) True G2217442
TU2536029 other upstream 1438670 26127054 ~ 26133044 (+) True G2217159
TU2538093 other downstream 256048 27837908 ~ 27843698 (+) True LOC110521656
TU2538335 other downstream 712035 28293895 ~ 28307326 (+) True fip1l1a
TU2539163 other downstream 965678 28547538 ~ 28548084 (+) True G2219989
TU2539165 other downstream 967169 28549029 ~ 28549478 (+) True G2219991
TU2539452 other downstream 1439726 29021586 ~ 29021882 (+) True G2220253

Expression Profile