RNA id: TCONS_00006086


Basic Information

Item Value
RNA id TCONS_00006086
length 1785
lncRNA type read_through
GC content 0.33
exon number 1
gene id XLOC_002900
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34196782 ~ 34198566 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTAGTTTAGTGGGTTTAACTaatgtcacatctgtttttattcatttcagatgcagaaacttttgacatatgaattcatcttgactaagggtaaggtttttgttcagaattaatcattatttaaaatcattgtattttctttgttattatgtacagattttaaaagaatgtactttcttttaataaagaactCTTCACAGCACTGCATCTGAACAGTCACAACCTCACAGAGCTGCACAACTACCCCACTCAAGATCAGTGTTGAAGCTGGAACCTCATCTTGTGTACAGCAAAGGCAGAGCTGAAAATTCACAGTTTGTCTTGTATTGTATGGTAAgtcatagttttattaattttttaattttattgcaacACTAAGTAGTCCAATCTGTGGCCAATATGATATAAAGGGCCTAAAATGGGACTGACGTGatcattgttttgatttctagataagtactcatggggctacacatgcagctgaagttAGCTTCATTGAGTTGGACATTTCTTTCGGTATACACTTAAAGAGGTTCACCCAAAaagcaaaattctgtcattaatgactcaaacttcacttgttccaaatatgtctgacttgctttcttcagttaaacactaaaaattatattttaaagaaagatgaaaacctgcaaacactgacttccatagtatttgttttttcctactatgcatgtcaatgatttcagcttttcagctttcttcaaaaaacttccttcatgttcaacacaaagtaacttggaagtttttaaaaaaggtttacaacaacttaaaggagagtaaatagtgaactgttcctttaacccaatctagttgactttactagaaaattgtatagaaacccagtgccttaaaccccttacattttatacagggtacaacttaacagccatacttgaattaaaatattactgtaagttcaagaagattgtaaaggttattggttaatttaaagtgggctgtttagtttcaccttgtgtaaaaacataaaggGTTTAAGGCAACATGTTTCTATGCAGTTTACACTCTTAACCCAAACTAGTTGACTTTATTGAATAAAGTCAACTAGTTTGGGTTAAGAGTGTAATGGTTTACAGTAATAGCAGTGAATAATgcaggcataaaataaatgtttagccatgtaaagcaataagcttgttataatttagaaatatttttagggTGGAGCACTGTATGCTGTTGTAGTTTTCATATAATTGATGAATCAAACATgagatgtgtgttttaaattgcaagaagtgaattaacaatatgttcatcaagattcaaatcttgcatcttatatatttttttaaggttttggcccaataatacccatattctgctatttaaaaaaacatgctggaatttgtgtcagcattcccttcaatgaaaactacagcagtggacatcagtggtgataaaaatgtatgcaaagGATAATGGTGTTCATAATGAAAAGTGCAGTCACTATCCTGATCTCTGAGTTTGTAGAACTGACAGATCTGCTTGGAATACATGGaaacatgctggaaatgtttaacctattatacagttaattaaagagtgccaggtttaatgacactttacatatataaataaatatcacggAACTTTCTAAATGAAACCTAACACTCATTCTTTGTTCAGTAATGATATTGTGCACTTCTAATACTTTACAGTGGCAAAACCTGGAATAACGCTtgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005339 lncRNA downstream 316418 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00006085 lncRNA downstream 531993 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005338 lncRNA downstream 577840 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006084 lncRNA downstream 1032209 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00006083 lncRNA downstream 1299838 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006087 lncRNA upstream 553744 34752310 ~ 34772155 (-) False XLOC_002903
TCONS_00005364 lncRNA upstream 569290 34767856 ~ 34772211 (-) False XLOC_002903
TCONS_00006088 lncRNA upstream 569410 34767976 ~ 34772211 (-) False XLOC_002903
TCONS_00005773 lncRNA upstream 569445 34768011 ~ 34768673 (-) False XLOC_002903
TCONS_00006089 lncRNA upstream 671723 34870289 ~ 34871737 (-) True XLOC_002903
TCONS_00005353 mRNA downstream 21924 34171674 ~ 34174858 (-) False XLOC_002898
TCONS_00005352 mRNA downstream 46110 34147484 ~ 34150672 (-) True XLOC_002897
TCONS_00005350 mRNA downstream 46205 34120543 ~ 34150577 (-) False XLOC_002897
TCONS_00005349 mRNA downstream 73049 34120543 ~ 34123733 (-) False XLOC_002897
TCONS_00005351 mRNA downstream 73049 34120545 ~ 34123733 (-) False XLOC_002897
TCONS_00005356 mRNA upstream 21926 34220492 ~ 34243269 (-) False XLOC_002901
TCONS_00005357 mRNA upstream 41518 34240084 ~ 34243269 (-) True XLOC_002901
TCONS_00005359 mRNA upstream 538756 34737322 ~ 34741738 (-) False XLOC_002903
TCONS_00005360 mRNA upstream 538756 34737322 ~ 34772211 (-) False XLOC_002903
TCONS_00005361 mRNA upstream 538756 34737322 ~ 34871737 (-) False XLOC_002903
TCONS_00005343 other downstream 163361 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005331 other downstream 819568 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 819696 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005329 other downstream 819841 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005308 other downstream 1586013 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005358 other upstream 128696 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005381 other upstream 786052 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005403 other upstream 1171271 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 1421767 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005408 other upstream 1455679 35654245 ~ 35654354 (-) True XLOC_002923

Expression Profile

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