RNA id: TU2538093


Basic Information

Item Value
RNA id TU2538093
length 3245
RNA type TUCP
GC content 0.43
exon number 3
gene id LOC110521656
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27823914 ~ 27844041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCATTTCAGGCTGCTCTTTTACCTTTGGCTGGGAACGACTATAAGCCCGGCTTGGCTGACTCACAGTGGCCCCACCGGCTACCACAACCCCTCCTGGCTGCCTGGTTCAACCCTATCTCATGTCCTCTTCTCCCTGGTCCACTAACAGTAACAAAACAGAAAGGAATGACTCTGTTTCTCCCCAACTGTGATCTCCATTTTTCCCCAGTAGCCCAGCACTCCTCCACTCCATTCCACTCCCGGTACTCTACCCCCCCTCGCTCCTCCCAAACAGGAACTCCCTCTCGATCCTTGCTGTCCCCGAAACCCAAACAGCACCTCCAAAGCCCTTCTTCCCTCCGAGTCCCTTCTCCCAGTAAGCTGCGAACCCCAGCCACCCCGTCTCCCCTGGCCCTGAGGCAGCCTGTAAAGGCCACGTCTACCCCTGGCTCTGGAGCCTCCACCCCCACACGCTCCCTGGGCCCAGCACGCAGCGGCCTGCCCCGGCCCagtgcaggaggaggaggaggtggcatCCCTGTGCCTCGCAGCAAACTGGCCCAGCCAGTACGCAGGTCTTTACCTGCCCCTCGGACCTACAGTGGCGGAGAGAACTGGAGAGAGGGCTGCTACTGAGGCTGGCATGGCCAGCAGGGGGCACTGTTGCTCTCTCATCAGCACAAAGAGGCATACAAACATTACAATGCGGCACTTTATCAACCAAGATTACTTTTACCATGAATCAAGAAACTATATCAAAGACACAAGTCACATTCTTCGTACTATCATGAGCAACATGATCTGAACAGCTGAAGCAACAtggtgtgtttatctgtgtggaGAGGTTCTGAAGGGGCCAGGGGCCGTGCTATTCCAGTTCCTTAGGACGTTCCTACTAGTGGCCCGCAactgctaataacccatccggaACCGCCCGTCAATGTGAAAATCTGAGGTCCGCACCCGACCCTTACCCGCTAATATAGAAAATGCGCTATATACCACATTCGAAACCAGCTAAACTATTTTTTGACAGGGGGTGCAGGATTTTTTTTGTGCCAAATGTAGATATGTTACTGCATATAATTTCTAACATtttagtaggctatttgttatttaacttgtctataattagatacatttCATTATATGTAGCCCTAGAAGACCAAGTAAACCCATTAATCAgtagaatgaatgcttcaatctagttgacatcggtaGTTTTCTGTCATCTGTTTATTTTGCGGATGTAAGActtagggaccggggagaaaatgcaataacaaaaaatataaacaggAACGATTTTCTGTGCAACATTTTCTAAGGATATTTGTAAGGAAATCGAACGCTGTGAAAAAGAGCTGTGAAAAAGAACAAAAtgatttctccactcctgttcctgaGTCAAAATGTTGCCTACATTTGGTGTATAATTTTACTTCAggaaatgcttaattctgcaggagttaatattaatgCTATGTGGGAGGTTGTGATTGTCAAATTTGTGTAGTGCCTCAATCATGCATAACATAAACAtaggtttagggtagggatgtcccaagggtCCTGTATAGCACTAACCAAGGGGCCAGGCAGGGCTGGCGTGCGGAAGGGGCCAGGCAGGGCTTGCATGCGGAAGCCCAGAGATGCCAAAGAAACCAGCCGAGCTCCAGCATCACGGCGCCTCCAGAGGGCACTGTCACATGCCTCGGGGTGTCTGTTCAGCCATCAGTCAATCACACAATGCTTTTCTTCATCTCCCTTACTCCTTCCCTCGTCGCTTTTATCTTTTCACCTCCCTCAGGTTGAAATGTTTCTACACATTTCTCTTTTTGCAGTCTGTTCTTAACAGATGCCTTGGTTAGAGATCTCTATGATTATGCTGTGCAGGTGAAGTGTTCCCTTAATGTTAAAGAAATGTTGTGAATGTTTTACGAAGTGAACTCACctctgtatggttgtgttgtcAAATCATAGTTTTTGGTCCACTTGTGAAACAACTAGAATGTATTAATGTTTGTTTGGGACATTATTTATTCAAATAATTATTTAAAGAGTTCCTTttccaaatatacattttcagcaTTCGTTTTCTATTGATTtgaataatttgtaaaaaaaaaaaagaacattttGAACCTCAACTGCAAAGCTTATTCTCCAAAGTCTTTTTAGAGGGTTTAATAACAGGACATTTGTGTTTTTATGTTGAACACACAGGTGACTGGTAGAAACAGGCCAAAGTCCCATCTCTGACCTTAAACATAACTATTGCTTAACCTGGACTGACTATCACATATTTTCCAGAGCTGGGTAGACAGTAGTCATGTCAAACTGGGCCAATCACTGGTAGCCATCACAGTCTCACTCCAAATCTACTTCTGGATTGGTTGGTTAGCTCCATCTGCTCTCCCACATTGGTTTAATGTGCAGTTACAATATCTACTGTATAGTCAGACATGCTCCCACTAAAACATATAGAATTCCGCACTTGTAACCCTGAGATCTGAGCATGCAGAAAAGGCTTGATGTAGTTAATTTAAAACCTGCAACAATATTGTGTCAGTGTATGTTATGTCAAGACGGAGAGAATACATTATCATGACATCTTAAGATAATAATGGAAGTTGTATAAGTTAGTGGCCATTTGCCTCTTGTGCTTTAAAATGAATCAAAAGAGGAGTGCCGAGATTCATAGGGATTGTATTGGTGTGCCAGAAATTATCAAACTAGTGCCTATTCATTTAAAGTTTCACTTTATTTTGAATGTGCTTTTATTTGTTCATTTATCATTATGTGCCAATAATGTCTTGGTTTGCCAATATAATTTGTGTCTTTGCATTTCTGCTTGATTTAGTTTGGGCTAATTTTGTTATTTTAATTGTATCAATGCATTTATAATTGCTTGTGTATAATATGCGCCTTGATATTTATAACAAATGACTCTCATTCTGTAAATGAAACTATTTAAGAGAGGTGCCTCTGTATGTCAAGGTTTGGATTTAGTGGAAAACTTGGTTAGTGTTGCAAAAAATACATGCCACACCATTTTGGGATAGTTTTTGTTAATTCACCTTTTTATATTCACCAACATGACATTCGGGGTTGGATTCAATTCGTATTGCATAAGTATCGCGGAAGATCCAtgttgaaatttaaaggcaatgttcccgcgtcCACAGAGACTACATTCACGCTGCCTATGTCGGATGTtctgcgatacggattgaatccagaCCTCAGATTCCCTGTATAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2538083 lncRNA upstream 20988 27816721 ~ 27816920 (+) True G2219006
TU2538082 lncRNA upstream 22141 27815522 ~ 27815767 (+) True G2219005
TU2538080 lncRNA upstream 26106 27811564 ~ 27811802 (+) True G2219003
TU2538079 lncRNA upstream 27564 27809664 ~ 27810344 (+) True G2219002
TU2538024 lncRNA upstream 83637 27748073 ~ 27754271 (+) True G2218953
TU2538107 lncRNA downstream 6938 27850636 ~ 27850965 (+) True G2219026
TU2538052 lncRNA downstream 10657 27854355 ~ 27855129 (+) False LOC110521658
TU2538051 lncRNA downstream 10769 27854467 ~ 27855190 (+) True LOC110521658
TU2538042 lncRNA downstream 13439 27857137 ~ 27858979 (+) False G2218968
TU2538043 lncRNA downstream 13439 27857137 ~ 27858979 (+) True G2218968
LOC110522775 mRNA upstream 15040 27801294 ~ 27822868 (+) True LOC110522775
XM_021599355.2 mRNA upstream 152638 27672920 ~ 27685270 (+) True LOC110521654
XM_036968864.1 mRNA upstream 175560 27608444 ~ 27662348 (+) True LOC110521651
XR_005040961.1 mRNA upstream 256048 27571714 ~ 27581860 (+) True LOC118945810
XM_036968587.1 mRNA upstream 266522 27567817 ~ 27571386 (+) True LOC118945773
XM_021599387.2 mRNA downstream 8107 27851805 ~ 27854587 (+) False LOC110521658
NM_001124681.1 mRNA downstream 11666 27855364 ~ 27856930 (+) True LOC100136720
XM_021599388.2 mRNA downstream 119209 27962907 ~ 27971343 (+) False LOC110521659
XM_021599389.2 mRNA downstream 119209 27962907 ~ 27971343 (+) False LOC110521659
XM_021599390.2 mRNA downstream 119333 27963031 ~ 27971343 (+) False LOC110521659
TU2537836 other upstream 335228 27497877 ~ 27502680 (+) False LOC110521646
TU2537501 other upstream 611603 27225374 ~ 27226305 (+) True G2218483
TU2536280 other upstream 1085444 26721985 ~ 26752464 (+) False LOC110521633
TU2536346 other upstream 1229965 26607523 ~ 26607943 (+) True G2217442
TU2536029 other upstream 1704864 26127054 ~ 26133044 (+) True G2217159
TU2538335 other downstream 450197 28293895 ~ 28307326 (+) True fip1l1a
TU2539163 other downstream 703840 28547538 ~ 28548084 (+) True G2219989
TU2539165 other downstream 705331 28549029 ~ 28549478 (+) True G2219991
TU2539452 other downstream 1177888 29021586 ~ 29021882 (+) True G2220253
TU2542282 other downstream 3020126 30863824 ~ 30866522 (+) True LOC110521703

Expression Profile