RNA id: XM_021599414.2


Basic Information

Item Value
RNA id XM_021599414.2
length 1974
RNA type mRNA
GC content 0.46
exon number 6
gene id tmem165
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 28769232 ~ 28774166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatcccgtATGAGTTCTATCCAAAGCAGAAATGGTTATATCCTCAATGGTTCAATTGGCAAGCTTTTCTACCAACACCAACTAGCTATGTAGTGTACGTCTAGCTAATTTTATCGAGTGGTTTACGCAGTCAGGGGCAGTGATTTTTATCATTTAACCCATACGCTTATGTAAACTGCCTTTATTATCAGCATTTTTAACACAATCTGATTGCTTCCCTTTGTTAAAATGTATCTACTGGCCGGCAGAAGGAATGGAAGGGCTAACATAAGTATGATGCGTGTCCTGCTGCCCCTGGTTGTCGCGGTGTTGTCAGCTGGAGTTTCTGGAATACAGGAGGAACACAAACCAGTCCAAGAACAACCGCAACAAGAGAAAACACCAACTGCTCATGCTATTGGCCCAGAGGTCAGTGAAAATGATTCCAGCAAATCTGGTGACCTGGGCTTCATCCATGCCTTTGTTGCTGCCATCTCTGTCATCATTGTCTCTGAGCTGGGAGACAAGACTTTCTTCATCGCTGCCATCATGGCTATGCGCTACAACCGCCTCACTGTGCTGTTAGGGGCAATGCTAGCGCTTGGCATTATGACCTGCCTTTCAGTGATGTTTGGCTATGCCACCACCATCATCCCCAGGATCTACACATACTATGTGTCCACAGCTCTGTTTGCCATCTTTGGTGTTCGCATGCTGAGAGAGGGGCTGAAAATGAGTCCAGACGAGGGtcaggaggagctggaggaggtgcAGGCTGAGATTAAAAAGAAGGATGAGGAGCTCCAGCGGTCTAAGCTGGTGAATGGGGCTTCAGATGTGGAGTTGGGCTCAGGGTCAAGCCATCCTCAGGGGAGATGGCACAGCTTCATCTCGCCTGTGTTCATCCAGGCCTTCACCCTCACCTTCCTTGCAGAGTGGGGAGACCGCTCTCAGCTGACCACCATCATCTTGGCTGCCCGGGAGGATCCTTTTGGAGTGGCAGTGGGTGGTACTCTGGGACACTGTCTGTGCACAGGACTGGCTGTGGTTGGAGGAAGGATGATTGCACAGAAGATCTCTGTCAGAACTGTTACAATCATTGGTGGGATAATGTTCCTGGCCTTTGCATTCTCTGCCCTCGTCGTCAAGCCAGATGCTGGAATCTGATTGGAGTACATACCTGTAAAGCTCAACTATGTGTATTTGGAGAGGCTGTACTCTTGACTCTGTGTGTACGACAGTTGTACTGTACTCATGGTGTGGGTGAGATATGGAGAATATTCTATAATGGGACTCTAAtgggtgagtgtgtctgtgtgaatgttGCCCTCTTGTCTTACTGAGTCTGTGATCCCTCACCGGTCTGAATCCTGTGGCTTACACACAGGACAAGACTTACGTCTCCCGCAGGCCTGTCGGTACTGATCTTGGGTCTGTTTTATTAATTCGTTCCCCATCCTCTGGTTATTATATTATGATTTAAGAGCAGCTCATTCATTGACTGAGTGCATGgaatctctcctcccctcttcagcATGAGCTCAGTGTTGTTGAACGCTGACTTCAGGGAAATCCCATGGAGGGCCAGTCTGTCTGTTATCTACCACTCAAATTACTACAACGGTTTATGAAGAGGTTGTGTGAGGCCTACTGATGAAGAAATCATGGAACAAAATACTTCATAGCTTCACTGCCATGTTTTGAGACCTGAGCCATTGTCTACTACACCTTTCCTGAAAGTGGTTGGTTATGGTATTTATTTACAACTTTTGAGCAGAGATTGGTATtgttaactttttatttttttagctgAAGTACTGTAGACACTATACTTTTTTAAAAAGTGCACAGGGAAATGTCACTACATTGTCAATATTTGACAAGTTGTACCCTGTGATGACCGACCAAGCGTGTACATGTACGCTGTTTGAGATATTCACTTCATTGTTAAAGCCTGATTAATGTAAATACTCAATAAAACCTGTCATGCCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2539208 lncRNA upstream 155155 28613919 ~ 28614126 (+) True G2220031
TU2539203 lncRNA upstream 162682 28606269 ~ 28606599 (+) True G2220026
TU2539202 lncRNA upstream 166437 28602635 ~ 28602844 (+) True G2220025
TU2539164 lncRNA upstream 220364 28548400 ~ 28548917 (+) True G2219990
TU2539158 lncRNA upstream 227375 28541588 ~ 28541906 (+) True G2219984
TU2539414 lncRNA downstream 177917 28952083 ~ 28952436 (+) True G2220223
TU2539415 lncRNA downstream 178427 28952593 ~ 28953950 (+) True G2220224
TU2539416 lncRNA downstream 180058 28954224 ~ 28954455 (+) True G2220225
TU2539420 lncRNA downstream 182969 28957135 ~ 28957485 (+) True G2220229
TU2539432 lncRNA downstream 206326 28980492 ~ 28980755 (+) True G2220235
XM_021599413.2 mRNA upstream 656 28765363 ~ 28768625 (+) True srd5a3
XM_036969494.1 mRNA upstream 101367 28627916 ~ 28667914 (+) False LOC110521672
XM_036969495.1 mRNA upstream 101367 28627916 ~ 28667914 (+) False LOC110521672
XM_036969496.1 mRNA upstream 101367 28627916 ~ 28667914 (+) True LOC110521672
XM_021599407.2 mRNA upstream 192639 28555383 ~ 28576642 (+) True pdgfra
XM_021599419.2 mRNA downstream 137399 28911565 ~ 28925770 (+) False exoc1
XM_021599422.2 mRNA downstream 137399 28911565 ~ 28925770 (+) False exoc1
XM_036969318.1 mRNA downstream 137399 28911565 ~ 28925770 (+) False exoc1
XM_021599420.2 mRNA downstream 137400 28911566 ~ 28925770 (+) False exoc1
XM_021599423.2 mRNA downstream 137400 28911566 ~ 28925770 (+) False exoc1
TU2539165 other upstream 219803 28549029 ~ 28549478 (+) True G2219991
TU2539163 other upstream 221197 28547538 ~ 28548084 (+) True G2219989
TU2538335 other upstream 461955 28293895 ~ 28307326 (+) True fip1l1a
TU2538093 other upstream 925583 27837908 ~ 27843698 (+) True LOC110521656
TU2537836 other upstream 1266601 27497877 ~ 27502680 (+) False LOC110521646
TU2539452 other downstream 247420 29021586 ~ 29021882 (+) True G2220253
TU2542282 other downstream 2089658 30863824 ~ 30866522 (+) True LOC110521703
TU2545552 other downstream 4797974 33572140 ~ 33604894 (+) True G2225948
TU2548066 other downstream 6407803 35181969 ~ 35190151 (+) False LOC110521757
TU2548536 other downstream 6744068 35518234 ~ 35519242 (+) True G2228777

Expression Profile