RNA id: TCONS_00005356


Basic Information

Item Value
RNA id TCONS_00005356
length 1642
RNA type mRNA
GC content 0.48
exon number 7
gene id XLOC_002901
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34220492 ~ 34243269 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTATAAAGCTTTTTGACGTAGCAGAAACTCTCATTAGCTTCTTTGGATGtctagtagttcagtactttctgcgATTCAACAGTACAGTGATACAATGGCATTTTCAAAACTGATTAACCGTCTGAAGAAAGCGTTTGGTGTTAAGTGTGCGAACGAACAACCGTGTGAGCCACTCGAACCCACCGGCAGCACGACAGAGAATCACCGTCATCTGATGACCGATGACCCGGCCGTCGCTGCAGGAAAACAGGCAGGGagacagaaaaagaggaaaaTCAAATTGTCTCCCATCTTCTTCGCCTGTTTTTCCAGAAGAAGAGCTACTGTTGTTGATCAGCTATGTGTGCAGGAGATCCATGAACTTCACGCAGAGCCCATCAGTAGCTCTAAATTCTTCTGCACTGCTGTGAGCAACCTGGAGCTGGAAGTTCTCCAACCTCCAGCTCTTGATGCTCCAGCAGACGAAGATTTGGACTTTAAGCCGGAAATGAACAGCTTTGACTCTGCAGTGGTCATTGAGAACGACTCTGCAGAGCTTCACTTCCCAGAAGACATTGAATCCTCCCTCAGTGAGGACAGCCTGGAGCAAGAGCTTGATAGTCCTCCAAGTTCACCATCCGATGAGGACAATGAACTTCCAGTGAGCCAGCAGCTCATAACAGATGACATCTGTGACTCTGCCCTGGATGAAAACTCAAACCCTTTACCGGATCAGGTCTCACAAGAGGACTCTGCTGTGAAGTCTACAGCAGATGatgggacctgcttggacaataATGACATCAGCTGCCGCTACAAACTCGGAAAGCAGCTTGGTGAAGGAGGTTTCGGCTCCGTGTATGAGGGGATTCGCATACAGGATGGTCTGCAGGTGGCAGTTAAATTTGTCCAGAAGACCCCAAATATGCAAGATGTCAGCTCTtcatgtgaccaGCCACTTCCTCTAGAGATCACCTTGGCAAACATGGCCAGCGGTGGCTCCAGGTGTTCGAACATTATTCAGCTTCTGGACTGGCAGGTCTTTGAAAACCATTACGTCATGGTGATGGAGCGGCCTAGTCCAAGCATGGACCTGGAGGCATTCCTTGAAGTCAGCGGAGGAGTCCTCAGTGAGAAAACAGCACATACCATCATGAGGCAAGCTGTTTATGCGGCCAACGTGTGCTGTTACCGCGGGGTGTTCCACCGGGACATTAAGCTTCAAAACCTGCTGGTGAACCCCGACACACTGGAAGTCAAGCTGATCGACTTCGGGTGTGGAGACTTCATGATGGAATCAGCCTACAGTATCTTCTCTGGCACAGAAGCGTACATCCCGCCAGAGTTTTATGAAAAAGGATGCTACCGGGCCAAACCAGCGACGGTCTATTCTCTTGGGGTTCTTCTGTTCACAATGCTCCATGGAGAATTCCCATCAGCGTATGACCTGTACTACCTCCAACATGACTGgtccaaatttaccctctctcaagAATGCTGTGATATGATGAGGGCTTGTCTGCATGAGAATCCAGAGTGCAGAATTCCTCTAGAAGAGATGCCTTACCACGACTGGTCCATGCTGGAGTTCTGAGTCACATTAGCagaatgttttgtatatttgatttttgtacatgtctgtaataaagatatattttattg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000191406

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006086 lncRNA downstream 21926 34196782 ~ 34198566 (-) True XLOC_002900
TCONS_00005339 lncRNA downstream 340128 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00006085 lncRNA downstream 555703 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005338 lncRNA downstream 601550 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006084 lncRNA downstream 1055919 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00006087 lncRNA upstream 509041 34752310 ~ 34772155 (-) False XLOC_002903
TCONS_00005364 lncRNA upstream 524587 34767856 ~ 34772211 (-) False XLOC_002903
TCONS_00006088 lncRNA upstream 524707 34767976 ~ 34772211 (-) False XLOC_002903
TCONS_00005773 lncRNA upstream 524742 34768011 ~ 34768673 (-) False XLOC_002903
TCONS_00006089 lncRNA upstream 627020 34870289 ~ 34871737 (-) True XLOC_002903
TCONS_00005355 mRNA downstream 19742 34187231 ~ 34200750 (-) True XLOC_002899
TCONS_00005353 mRNA downstream 45634 34171674 ~ 34174858 (-) False XLOC_002898
TCONS_00005352 mRNA downstream 69820 34147484 ~ 34150672 (-) True XLOC_002897
TCONS_00005350 mRNA downstream 69915 34120543 ~ 34150577 (-) False XLOC_002897
TCONS_00005349 mRNA downstream 96759 34120543 ~ 34123733 (-) False XLOC_002897
TCONS_00005359 mRNA upstream 494053 34737322 ~ 34741738 (-) False XLOC_002903
TCONS_00005360 mRNA upstream 494053 34737322 ~ 34772211 (-) False XLOC_002903
TCONS_00005361 mRNA upstream 494053 34737322 ~ 34871737 (-) False XLOC_002903
TCONS_00005362 mRNA upstream 494861 34738130 ~ 34870667 (-) False XLOC_002903
TCONS_00005363 mRNA upstream 501203 34744472 ~ 34772213 (-) False XLOC_002903
TCONS_00005343 other downstream 187071 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005331 other downstream 843278 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 843406 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005329 other downstream 843551 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005309 other downstream 1609798 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005358 other upstream 83993 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005381 other upstream 741349 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005403 other upstream 1126568 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 1377064 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005408 other upstream 1410976 35654245 ~ 35654354 (-) True XLOC_002923