RNA id: XM_021599471.2


Basic Information

Item Value
RNA id XM_021599471.2
length 1841
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110521693
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 29598550 ~ 29604909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCGTCAGCGTTTAAGCACTGTAGCTGTATAAAACCCCAACTGTGGGAGGAGGCTTCACTAAGACAGAGCGTACTACTGACTTACTGAGAGGACTACCAGTCATAATATTACAACCTTTTCCTCTGCGCTCAAAACCACTGCAAATCATTCTCCTTGATTTGGATTTAGCAAAGAGGCAACATGTGTAAGGGATTAGCAACACTGCCTGCAACCTGTATGAAAAGTGCCAAAGACATCAAGCACAAGATTGGATTTCTGCTCCATAAGCCTGAGGTTCCACCAGACAAGGAACAGATAAAAGAGAAGACCAACATTGCCAAGAGAGTTTCACCTGCTGATGTGGAGAAATGGAAACTGTCCTTCAACAACCTGATGAATAGTGAAGCTGGCCGTACGGTGTTCACTACCTTCCTGAAGGCAGAGTTCAGCCAGGAGAACTTGGAGTTCTGGAAAGCTTGTGAGAAATACAAAATGTCAGCCCCCAAAAATATGGCAGGTAAAGCCAAACAGATCTATGACCAGTACATCGCGGCAGACGCTCTTAACGAGgtGAACTTGGACTCAGCAACGCGAGAGGAGACCAGACAGAACCTGTCTAATGCCGGCCCATTCTGCTTCGACAACGCCCAGCAGAAAATCTTCACTTTGATGGAGAAAGACTCATACAGAAGGTTCCTCTATTCCAAACTGATCCAGGATCTGTCCCCGttgcccaccaccaccacccaactCAGTGCTctggagaaaaggggagggatgagaggctgttctgagagcggTGGTGCatagacagagatggaaagagagaaacatTGACAATTAAAGCACTCTGTCATAATCTGTGAGGGAAAGAGTAGGTTGTCTTAAAGAGAAAACATTGTTATGAGTGGGtggatttagatttttttctgtCAGTTGTTCAAAAGAACTATTTCAACAAGTATCATGAATTGCTTGTCTTTCAGACTAGGGTATgcttggagagggagagaagaaaacgATCAGAGATGTGATTTTCAGGACAAAATATCATCCTCTTTCTCCTGATTTTCCATTGTTTTGTAAAGGTCTACTTTCTTTCCATGTAATATCTTCCTGAGCTCTAACAAGAGTCAAATGATTCAAACAGGCATTTAGGCATTTCACTCTGGTCAGCTCCCTGTTTCCCCCCTGTCTGGCTTTCATCAAGGGCTCAAAGCTAAGTCATGCATGTACGCCAATAATGCTTTCCGGCTTGAAAATGCTCTTCCTCAAACTGAGTGTTAAATTagattatagtttatagtttatatCATTGCTTTACCTTAGGCTAGTTTGTGCACTGCTGAGGTGTAGCTCACTTGCCCTCTGTTAACCTGCCGATGAAGTCATGACCAGGTGATGTTTTGATTCAAAACACAGGGAAAAACAATGAGGAActacctctctatccatccctatCCCACTTTCTGGGTGACCTGAACATTGACTGGTTAGCAACTAGCTGTCTTCTCAAGAGGAAGCTTGTGACTGTGCCTGTAATATGACTCAGGTTATCACTAAACCAACTAGCGTGCATACTAATAGTGTTGGATCTGTAACATCCATTTTTATATTGGTCATATCTTCACTAATGCTGCAGAGCTTTGCTCTAAGGCAATATCAGTTTCCTTTGGCTGTAGTGACCATAACATTGAGGCAATGACAAGGAAAGCCAAAGGTTGGGCCTAAAGTCATTTATTAATTGTTAATTCCAATTGTTGACAAGCATGCACCAGTTAAGAAACAAACTGTGAGAACTGTTAGAGCCCAATGGATTGATGATGTTCAAATAAATAATGCAAAAGAGGTGGCAAACAA

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2540239 lncRNA upstream 13477 29584869 ~ 29585073 (+) True G2220960
TU2540236 lncRNA upstream 22432 29575885 ~ 29576118 (+) True G2220957
TU2540212 lncRNA upstream 58265 29538068 ~ 29540285 (+) True G2220937
TU2540123 lncRNA upstream 71418 29413156 ~ 29527132 (+) True G2220856
TU2540089 lncRNA upstream 187613 29351574 ~ 29410937 (+) True G2220823
TU2540566 lncRNA downstream 25115 29630024 ~ 29630244 (+) True G2221272
TU2540574 lncRNA downstream 29944 29634853 ~ 29639083 (+) True G2221279
TU2540602 lncRNA downstream 67408 29672317 ~ 29691242 (+) True G2221307
TU2540641 lncRNA downstream 131514 29736423 ~ 29736626 (+) True G2221345
TU2540723 lncRNA downstream 137197 29742106 ~ 29742737 (+) True G2221420
XM_021599467.2 mRNA upstream 294610 29284901 ~ 29303940 (+) True LOC110521691
XM_021599453.2 mRNA upstream 444846 29130397 ~ 29153704 (+) False LOC100135939
XM_036968497.1 mRNA upstream 444846 29130397 ~ 29153704 (+) False LOC100135939
XM_021599454.2 mRNA upstream 444846 29130645 ~ 29153704 (+) False LOC100135939
XM_021599455.2 mRNA upstream 444846 29134656 ~ 29153704 (+) True LOC100135939
XR_005040924.1 mRNA downstream 931327 30536236 ~ 30548668 (+) True LOC110521700
XM_036969302.1 mRNA downstream 1241772 30846681 ~ 30850528 (+) False LOC110521701
XM_036969303.1 mRNA downstream 1241772 30846681 ~ 30850528 (+) False LOC110521701
XM_036969304.1 mRNA downstream 1241772 30846681 ~ 30850528 (+) False LOC110521701
XM_021599483.2 mRNA downstream 1241774 30846683 ~ 30850528 (+) False LOC110521701
TU2539452 other upstream 576668 29021586 ~ 29021882 (+) True G2220253
TU2539165 other upstream 1049072 28549029 ~ 28549478 (+) True G2219991
TU2539163 other upstream 1050466 28547538 ~ 28548084 (+) True G2219989
TU2538335 other upstream 1291224 28293895 ~ 28307326 (+) True fip1l1a
TU2538093 other upstream 1754852 27837908 ~ 27843698 (+) True LOC110521656
TU2542282 other downstream 1258915 30863824 ~ 30866522 (+) True LOC110521703
TU2545552 other downstream 3967231 33572140 ~ 33604894 (+) True G2225948
TU2548066 other downstream 5577060 35181969 ~ 35190151 (+) False LOC110521757
TU2548536 other downstream 5913325 35518234 ~ 35519242 (+) True G2228777
TU2548634 other downstream 6088401 35693310 ~ 35735400 (+) True LOC110521768

Expression Profile