RNA id: XM_021599486.2


Basic Information

Item Value
RNA id XM_021599486.2
length 1810
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110521703
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 30863624 ~ 30866524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgacacagagagaggttgaaagagaGTGTCGCAAAAAGACAGAGAGCGcatgtcacagagagagagagatagagagagagcgtagGGGCTTCCTCTCTTGCCACGGTTCACTGGTCTGAGTCTGTGTTTCACCTTCCAGCCCTGCATATAAAGGCCTGAGGTGGAGGGAGACCCCACTATACAGAGAGTGATTCACCCCAGCATGAGCAGCAGCAGGGGACAGAGAGTGTGGGGTTAAAACATGCCCAGCCTAATCATCACAGAGACACTGATACAAACACAGCACTTCAATATGGAGCAGGACGACAGGAGGAGGAACAAGAACTTgGGAAAGAACTTTATGTGCCGACTGCAATGCATGTTCTCACATTCACCCACCTCTGAGAGGCTAAGTTTAGAAGATACCCAACAATGGTCTCAGTCACTGGAGAGACTCCTCGAGTCTAAATATGGACTGGCGACCTTCAGAACCTTTCTGAAGTCTGAATTCAGCGATGAGAACATTGAGTTCTGGCTGACGTGTGAGGAGTACAAGAAAATCAAGTCTTCATTCAGAATGTCATCGAAGGCCAAAAAAATCTATGAGCATTTCATAAAGGCTGAGGCTCCTAAAGAGATAAACATTGACTACCACACGAGGGAGCAGATCAAGAGGGCCGTGAAGAATCCTACACTCCAGTGCTTTGACGATGCCCAGAAGATTGTCTATGGGCTGATGGAGAGAGACTCGTACCCTCGCTTCCTGCGCTCAGACATTTACCGATCCCTCCTGGATTCCCTCGCCGCTGACGCCGTCAAGGGCTAATAGGAGCGGATTAGACGACAGGAGAACGTGACAACAGAAACTGGAATGTTTGGGATTCTACAGGATGGAAGGCTGACCAAGCATAGAGAGACTGACAGGCCTGTGTCCCTACGAACCGTGGTCGCCACAACACAAGACCACACCCTAAAACACTGCAAGTGGGATTCGCCcagagaaaaagaaagacagaaagacagaaggaaAGGCAGAGAGGATATGAGGAATGCTACAGCGCTGCGATTGCACTGGATGCTGCTGTCTTATCTGTAACTCTGGCAGTGACATCATATCATAGGTGATTAGATCGTCTTTGACAGTGATCACCGAGTGAATGACGATCGAACTGAAACACAACGTCAGCAACCATGCAGTCCCCACTCAACCGGAGGTGCTTCCTGTCCTAAAAAGATGGAgaagagagtgtatgtgtgtttgtgtgtgtgtttgtgtgtgagtgtatgtgcgcAACAGGATGCCTATGATACTGTGATAAGATAGGAGATGCAAGGTGGACTTTCACTAGCAATACTAAAGTACGTGGTCTGGAGTGAAACAAAGGAGAGAGCACGCATACAATGGATACCGGCCCAAAATACTATACTATCCTTAATAATATTCACATTTCGTCTCTAAATTCAAACCAGTTTTTCAAAAGGTGGTTGAATCTTTAGATTTGCAAGGCAGTTAAAGACTTCTTACACTGTCTATCATTGAATGATTACCCATTTAGAAGTAGAGGTTAAGTTGTCTGAGTGCAATTGTAGACAGAAGGGTAGCCTATGTCCCACTTTGTATAATGAACTTTGAACTCCTACTTCTCTGATGCAGAATATGTTTTGATTGCTTACAAAGAAAGCACAAAACAATGTTGATAAATTAAGATTAGAATGTTGTACTATTTATTACACAGTCACTGTTAGGATGCTGACTTTTGCAATGCTTGTAAAAATGTTCACGATTAGATtattaaattatattaaattaaattattaaattatTTGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2542224 lncRNA upstream 61164 30802158 ~ 30802460 (+) True G2222860
TU2542139 lncRNA upstream 105353 30758014 ~ 30758271 (+) True G2222780
TU2542092 lncRNA upstream 136642 30726609 ~ 30726982 (+) True G2222733
TU2542091 lncRNA upstream 137183 30725961 ~ 30726441 (+) True G2222732
TU2542072 lncRNA upstream 151690 30711729 ~ 30711934 (+) True G2222713
TU2542286 lncRNA downstream 6076 30872600 ~ 30873052 (+) True G2222914
TU2542253 lncRNA downstream 20104 30886628 ~ 30900111 (+) False G2222883
TU2542252 lncRNA downstream 32746 30899270 ~ 30900111 (+) True G2222883
TU2542291 lncRNA downstream 37326 30903850 ~ 30904125 (+) True G2222919
TU2542305 lncRNA downstream 58003 30924527 ~ 30924773 (+) True G2222933
XM_021599484.2 mRNA upstream 3139 30858838 ~ 30860485 (+) True si:ch211-117l17.6
XM_036969302.1 mRNA upstream 13096 30846681 ~ 30850528 (+) False LOC110521701
XM_021599489.2 mRNA downstream 12162 30878686 ~ 30880955 (+) True rgs2
XR_005040965.1 mRNA downstream 55369 30921893 ~ 30926393 (+) False LOC110521706
XR_002473182.2 mRNA downstream 56355 30922879 ~ 30926393 (+) True LOC110521706
XM_036968914.1 mRNA downstream 68931 30935455 ~ 30966895 (+) False LOC110521707
XM_021599492.2 mRNA downstream 68932 30935456 ~ 30966895 (+) False LOC110521707
TU2539452 other upstream 1841742 29021586 ~ 29021882 (+) True G2220253
TU2539165 other upstream 2314146 28549029 ~ 28549478 (+) True G2219991
TU2539163 other upstream 2315540 28547538 ~ 28548084 (+) True G2219989
TU2538335 other upstream 2556298 28293895 ~ 28307326 (+) True fip1l1a
TU2538093 other upstream 3019926 27837908 ~ 27843698 (+) True LOC110521656
TU2545552 other downstream 2705616 33572140 ~ 33604894 (+) True G2225948
TU2548066 other downstream 4315445 35181969 ~ 35190151 (+) False LOC110521757
TU2548536 other downstream 4651710 35518234 ~ 35519242 (+) True G2228777
TU2548634 other downstream 4826786 35693310 ~ 35735400 (+) True LOC110521768
TU2548707 other downstream 4934508 35801032 ~ 35802968 (+) True LOC110521770

Expression Profile