RNA id: XM_021599500.2


Basic Information

Item Value
RNA id XM_021599500.2
length 4316
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110521708
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 30978905 ~ 30989561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACGGCTATATTTGTGTTATGTAGCATTTGTTTGGCCCACAAATACAGGGCTTGTTCTATGAAGGGCATTTTACAGAGAACACAATGACATTCTGAATGGCACATAGACACAGTATTTAGGATCATCATCCACAGAATAGATAGCTAATGTACTTTATCAATTTTATAAGAAATGGAAATGTCTTCTTAAGAACCACCCCTTGCAAATTTTGAGAAGCACAGAATTCCAGTCCCCTGACATATATTTTAATAATTTCAAAGCCCTCCTTTTGAATATGTTTTTTTCAAAATGACAAGTTAAATATTGACACCAACATGATGTGTTGATGGGGCAATGTCTGACAGTACCTAAGAATATACAGCCAGTATTGGCTCCAGGAATCAAATGTTTAGTCTGTCATGAGGACACGAGATTACACAGCAAGTAAAGCACAGCTGCTGTGATCTGTTACAGTATGTATGCCATTTCTCTGTTTCCACTTTTAGAGAGCTGTTTCAGAGGTCACCGTCATTCATTATAACATGAAACTGATGTAAGAAAAAAATGCTTTGAAATGTCACTGCTTGTCATGGACTGATCGTAGCTGATTAGGCTGCTGGATATGTGGATCTGTGGAGGGTGCCAGAAAtgcactttttttttattttgagtgGTGTACCAAAATAATCCAGTGGAGTAAACTACTTTCCCTATGTAGGACTAAAATATATAGTTAACAAAATCTCCTATCAAACCAAAACATAAATAATGCAGCAATagcttttctgtatttttttaaaaatcataGATATGTTAGTTATGACAATGTAATACAACCAAGCTTTTATAATTTGTTTACAGTCAATGGGTGGTTTTGCATAAGGATATTgtatagattgtgtgtgtgtgtgccctacaGGCTTTGGTTTACACTTCACGCCAGGCAGCAGAGTTGAGACTTGTCTTGTTTTTGAGACATGATTGGTTGATACAGTAATACCAAAGATGGTTCGGTAAAGCTATTGGACTAGCTTAGGATACATTAAATATTTATTTCCTGTGCACTCTGTGTCCCATGCTGCAACCAACCTTCATGGCCGCAGCATGTCGCTATGGAGGAAGCAGAACCAAAGCAATTTTCTAATCAGCTTAGTGTCTGTTCAGCAGTACGGTTGACTAGATGTTAAGCATTTCGTCTTTGTTTACCTTATCGAATCATGGGACGTACCAATAATTATCATTTTTCGGCTGAAGTATCGAGGCAACGGGACCCATAAATTAATTGAAGTGATGTTTACTCTCACAGAGGTAGCCGCCCTGAATGACATCCAGCCGACCTATCGGATCCTGAAACCATGGTGGGACGTATTTATGGACTACCTGGGCGTCGTCATGCTGATGCTGGCCATATTTTCTGGAACCATGCAATTAACCAAAGACCAGGTGGTTTGCCTTCCCGTTCTGGAACCAACTCCAGAGGACCCCAGCAGCTTCACGACACCGCAGCCAGAGGAGGGgtctgggtcagggtcagggaacGGAGGAAGCAGGGTGACTCTAGCCGCAGCGCCCCTAATGATTAATGATCTACCGGATAGTGTCATCCACTTCACACAGTTTGGTGGTGTTGGACAGCAGCCTCCGCCAACAGGCGTCAGGACAAACCTGGACTTTCAGCAGTATGTTTTTGTCAATCAGATGTGCTACCACGTTGCCCTGCCGTGGTACTCAAAATACTTCCCATACCTTGCTCTCATACACACCATCGTCCTCATGGTCAGCAGTAACTTTTGGTTCAAATATCCAAAGACTAGTTCAAAAATAGAGCATTTTGTGGGGATTCTGGGGAAGTGTTTTGAGTCTCCTTGGACGACCAAGGCATTGTCCGAGACTGCATGTGAGGACTCGGAGGAGAATAAGCAAAGGCTCACTGGTGCCCATTCCCTACCAAAACATTTCTCAACCAGCAGTGAAGAGGGAAGTCCTAACCAGTCCACCCCGATGCTGGCTAAATCTGGGGTCAAGTTTACTGCTGATAAGCCTGTTATTGAAGTGCCATGCATGACCATACTGGACAAGAAAGATGGAGAGCAGGCCAAGGCCTTGTTTGAAAAGGTTAGGAAGTTCCGTGCCCACGTGGAAGACAGTGATTTGATCTACAAGCTCTATGTTGCTCAAACTGTGATCAAAACTGTGAAGTTCATTTTGATCTTGTGTTACACAATGACATTTGTTGCTTCAATTGACTTTGACCATGTGTGTGAGCCTGACATAAAACATTTAACCGGATACTCTAAATTCCAATGCACACATAACATGGCATTCATGTTAAGGAAGCTGCTTGTCAGCTATATTTCCCTCGTCTGTATATATGGTCTAATCTGTATATACACTCTCTTCTGGCTGTTTCGACGACCTCTCAAGGAGTACTCTTTCGAGAaagtcagagaggagagtagtTTCAGTGACATTCCTGACGTGAAGAACGACTTCGCGTTTCTCTTGCACATGGTCGATCAGTATGACCAGCTGTACTCAAAGCGTTTTGGCGTCTTCCTCTCTGAAGTCAGCGAGAATAAACTGCGAGAGATCAGCTTGAATCACGAGTGGACCTTTGAGAAACTGAGACAGCATGTAACCCGCAACGCTCAGGACAAACTGGAGCTCCATCTCTTCATGCTGTCAGGTCTGCCAGATGCTGTCTTCGATCTGACGGATTTGGAGATCCTAAAGCTGGAGCTGATCCCAGAGGCCAGGATAACAGCCAAAATCTCCCAGATGATCAACCTTCAGGAGCTTCACTTTTATCACTGCCCTGCCAAAGTTGAGCAGACCGCGTTCAGTTTCCTTCGTGACCACCTCCGGTGCCTTCATGTCAAGTTTACAGACGTAGCTGAGATCCCCACCTGGGTGTACCTGTTGAAAAGTCTGAGGGAGCTATACTTGGTCGGGAATCTGAATTCTGAAAACAACAAGATGATTGGTTTAGAATCTCTCAGAGACCTGAGACATCTGAAGATTCTGCATCTAAAAAGCAACTTGACGAAGGTCCCAACCAACATAACAGATCTCTCTCCACACCTGATCAAGCTGGTTGTACATAATGACGGTACTAAACTCCTGGTACTGAACAGTTTGAAAAAAATGATGAACCTAGCTGAACTGGAGCTTCACAATTGTGAACTGGAGAGGATTCCCCATGCTATTTTTAGTTTGACCAACCTGCAGGAGCTGGACCTGAAATCCAACAACATTCGCACCATTGAGGAGGTCATCAGCTTCCAGCACCTCAATAGGCTGATCTGCCTTAAACTGTGGCACAATAAAATCATCACCATTCCATTGTCCATAAGCCACGTCAAAAACCTTGAGTCCCTCTACCTTTCGCACAACAAACTTGAATCTCTGCCCGTACCTTTGTTTAACCTGCTGAAGCTGAGGTATCTGGACGTTAGCCACAACTCCATAGTGGTGATCCCTCTGGAGATCGGCTTCATGCAGAACCTCCAGCACTTTGCCATTACAGGAAACAAGGTGGAGGTGGTACCCAAGCAGCTGTTCAAGTGCACCAAATTGAAGACACTATGTCTGGGACACAACTGTATCTCTGTCCTTCCAGAGAAGATAAGCAATCTGGTGCAGCTAACAAACCTGGAGCTTAAGGGAAACTGTCTGGACCGCCTGCCAGCCCAGCTTGGCCAGTGTCATCTCCTCCGCAGGAACTGCCTGGTGGTGGAGGACCACCTCTTTGACTCACTCCCCCTAGACGTCAAGGAGAGTATCAATCAGGAAGCCAACGTTCCCTTTGCTAATGGGGTGTGAGTGTGGGAGGACAGTCACTTTACCCATACAGGAAGGAGATTACAAAAATGTGGCAATAACTGTCCATGCACAGCCAGCTAGTCAACTCTTTTAATTACAGcatgtgaactggaataaagGTTTTTGCTCAGGGCTGACTCGTCGAACAGATGATGTTTAAACTTATAGAAAATGGCACTGTGCTAACTAGTCAGGTGAGTTGATTCCAGGTACTGTGGAAAATGCTAGATTGATGGTCTAGATCCAGAATGATAGGTTAGTTCCATAGTGATGGGCTGATTCCAGAATAAGGAGCTGGTTCCAGAGTGAGTTAGTTGTAGAATGACAGCAATGTTTGTGTTAGACCACTAAATGATTAGTCAATGTTCTGAGGAAAAGGGATGCTCCTCTTAATGAAACAGAATGGTGGTGTAGAATTCATAGATACCAGGGATACAGTAGCCTCagattattggcacccttgataaagatgagcaaaaaagaatGTATAAAATAAAGAATACAAATTCTGAA

Function

GO: NA

KEGG:

id description
K22038 LRRC8; volume-regulated anion channel

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2542460 lncRNA upstream 3328 30975358 ~ 30975577 (+) True G2223079
TU2542456 lncRNA upstream 5556 30973021 ~ 30973349 (+) True G2223075
TU2542341 lncRNA upstream 8235 30970352 ~ 30970670 (+) True G2222967
TU2542303 lncRNA upstream 9021 30968069 ~ 30969884 (+) True G2222931
TU2542322 lncRNA upstream 32951 30945363 ~ 30945954 (+) True G2222950
TU2542464 lncRNA downstream 3223 30992784 ~ 30996265 (+) True G2223083
TU2542474 lncRNA downstream 11367 31000928 ~ 31001263 (+) True G2223093
TU2542480 lncRNA downstream 20525 31010086 ~ 31010445 (+) True G2223099
TU2542531 lncRNA downstream 41338 31030899 ~ 31031488 (+) True G2223150
TU2542606 lncRNA downstream 101030 31090591 ~ 31090907 (+) True G2223225
XM_021599498.2 mRNA upstream 11125 30950088 ~ 30967780 (+) True LOC110521707
XM_036968914.1 mRNA upstream 12010 30935455 ~ 30966895 (+) False LOC110521707
XM_021599492.2 mRNA upstream 12010 30935456 ~ 30966895 (+) False LOC110521707
XM_021599494.2 mRNA upstream 12010 30935456 ~ 30966895 (+) False LOC110521707
XM_021599495.2 mRNA upstream 12010 30935456 ~ 30966895 (+) False LOC110521707
XR_005041053.1 mRNA downstream 179345 31168906 ~ 31168960 (+) True LOC118945898
XM_021599508.2 mRNA downstream 654273 31643834 ~ 31657204 (+) False LOC110521713
XM_036968792.1 mRNA downstream 654273 31643834 ~ 31657204 (+) False LOC110521713
XM_021599509.2 mRNA downstream 654627 31644188 ~ 31657204 (+) True LOC110521713
XM_036969207.1 mRNA downstream 673617 31663178 ~ 31685070 (+) True LOC110521714
TU2542282 other upstream 112383 30863824 ~ 30866522 (+) True LOC110521703
TU2539452 other upstream 1957023 29021586 ~ 29021882 (+) True G2220253
TU2539165 other upstream 2429427 28549029 ~ 28549478 (+) True G2219991
TU2539163 other upstream 2430821 28547538 ~ 28548084 (+) True G2219989
TU2538335 other upstream 2671579 28293895 ~ 28307326 (+) True fip1l1a
TU2545552 other downstream 2582579 33572140 ~ 33604894 (+) True G2225948
TU2548066 other downstream 4192408 35181969 ~ 35190151 (+) False LOC110521757
TU2548536 other downstream 4528673 35518234 ~ 35519242 (+) True G2228777
TU2548634 other downstream 4703749 35693310 ~ 35735400 (+) True LOC110521768
TU2548707 other downstream 4811471 35801032 ~ 35802968 (+) True LOC110521770

Expression Profile