RNA id: XM_036968467.1


Basic Information

Item Value
RNA id XM_036968467.1
length 7173
RNA type mRNA
GC content 0.54
exon number 35
gene id LOC110521733
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 33040140 ~ 33378427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCTGGCCTGTTCAGAACTTTGTGGGTATTCATTGGAGAGTGTCCCAGGAGAGATTGAGCTCCAGTGACCCCAGCAAGGCTCCCTACACCATTGGTAGGATTCAGTGGAATCTTTACAGACGGTGGCCATTTCACACAGCATAGTAAGGAGAGGGCCAGGCAGCTCGAGGCAAAGGAGTAAAGACACAACCAGAGTTAGACTACTTAGCAGCCAACCTGAAATGCTGCAACCTTCCTTCTTTCCCAGTTTCTTTCCCTCCACCTGTAGTGGCTAGTCCCCACcaccctggtctctctctctctctgactgcagaCTGACTGAGGTTTTGTGCTAAAGGACTAAAGGATATTGAGTAGAATCTTGTATGTATTTTTGAGGAATGACAGCAGTTTCAAAGACAAGTTTTATTTCCTGAGGAGTTTCCTTTATTGTGTATTTTTCATTTGGACATTGAAATGGCTGTCACTATGATTGTGTGAGCTCCTAGCCATCGAGCGGAGTGGGAGTGTCGGTAGGAGAACAGAGGCGAGAGGAGTGCCTACACCTGGACTATGGCGCCGCACCACCGGCGGGCAGAATATCCCCTCGCCAGGGGGGCCGTGCTTATCCTGCTCCTGGGCTGTCTGGCCCTGCCATCACCATCCCATGCAGACAgcATGCCCAGTTTCATCAAGTCTCCAGATGACCAGACAGGTATTTCGGGAGGCGTGGCATCCTTCGTATGCCAGGCGGTGGGCGATCCCAAGCCACGCATCACTTGGATGAAGAAGGGCAAGAAAGTCAGCTCTCAGCGCTTTGAGGTGATAGAGTTTGACGACGGCTCAGGGTCCGTCCTGCGTATCCAGCCCCTGAGGACCCACAGGGACGAGGCCATCTATGAGTGTACTGCCATCAACAGTGTGGGAGAGATCAACACCAGCGCCAAACTCACCGTCCTGGAAGagGACCAGATTCCCCATGGGTTCCCCACCATAGATATGGGACCCCAGCTGAAGGTTGTAGAGCGGACCCGTACAGCCACCATGCTGTGTGCTGCCAGTGGCAACCCCGACCCAGAGATCTCCTGGTTCAAGGACTTCCTCCCTGTAGATATCAACAGCAGCAACGGAAGAATCAAACAGCTCCGCTCAGGAGCTCTCCAAATAGAAAACAGCGAGGAGTCGGACCAGGGCAAGTACGAGTGTGTGGCGGTCAACAGCGCCGGGACCCGCTACTCGGCTCCAGCCAACCTATATGTGAGAGTGAGGCGTGTGCCACCCCGGTTCTCCATCCCTCCCAACAACCACGAGGTGATGCCGGGTGGCAGCGTGAACCTGACGTGCGTGGCGGTGGGAGCACCCATGCCCTACGTCAAGTGGATGATGGGGGTGGTAGACCTGACTAAGGAAGAAGAGATGCCCATTGGGAGGAATGTTTTGGAGGTCACCAACATTCGCCAGTCTGCCAACTACACCTGCGTGGCGATATCGTCGCTTGGTATGATCGAGACCACTGCACAGATCACCGTCAAAGCCCTGCCCAAGCCCCCCACCTCCCTGATTGTGACTGAGACCACAGCCACCAGCGTCACTCTGACCTGGGACTCCGGGAACCCTGAGCCTGTGTCCTACTACGTCATCCAGTACCGGGCCAAGGTCTCTGACAACGGCTTCCAGGAGGTTGACGGAGTAGCCACCACCCGCTACAGCATCGGAGGGCTCAGCCCCTACTCTGAGTATGAGTTCCACGTCATGGCGGTGAACAACATTGGGCGTGGCCCTCCCAGCAGCCTCGTGGACACCAGAACCAGTGAGCaggctccctcctctccaccgCTGGCTGTACAGGCTCGCATGCTCAGCGCATCCACTATGCTGGTCCAATGGGAGCCTCCCGAGGAGCCTAATGGACAGATCAGAGGTTACCGGGTGTACTATAGCTCTGACCTCGGAGCCCCGCTGAGTGCGTGGCACAAACATAACACTGATGACAGCAGACTGACCACCATCTCAGGGTTGACCACAGATATCACCTACAGCCTCAGGGTGCTGGGGTTCACCTCTGTAGGGGACGGACCTCCGTCTGATGTACTGCAGGTCAAAACCCAGCAGGGAGTACCAGCCCAGCCATCTAGCTTCGAGGCAGAGGCAGAGTTGGACACCCGCATCATGTTGTCGTGGCTGTGGCCTGTCCAGGACCAGATCACCAAGTACGAGCTCATGTACTGGGAGGCTAACTCTGGCAATAAGCTCCACGTGACCTTCCCTCCAGCGGGGTCCTATGCTGTGGAGGGTCTGAAGCCAGACACCCTCTACATGTTCTCCCTGGCTGCTCGCTCTGAGATGGGTCTTGGCGTCTACACCCAACTTATTGAGGCCAGGACTGCCCAGTCCACCCCCTCAGCCCCGCCCCAGGAGATAGTCCTGCTGAGCCTCAGCTCCACCAGCATCAAGGTGAGTTGGAGAGCGCCCCCTGCAGCCAGCCGCCATGGGGACATTGTCCGTTACACACTGGCCTACAAGGCCGCAACTGGAGAGGACCTGGAGCGCCACGAGGTGTCGGACATCGGGGCAGACGTCTCTAGTTACATACTGGAGGGCCTGGAGAAGTGGTCAGAATACCAGGTGTGGGTCAGGGCTCACACGGACGTAGGCCCAGGCCCAGAGAGCCCTGCAGCCCGGATCAGGACCAAGGAGGATGTGCCCGGAGCCCCTCCCAGGAAGGTGGAGGCTGATGCCCTGAACTCTACAGCCCTGAGGGTGATGTGGAAGCCCCCCCTCCAGGTGAAACAGCATGGGCAGATCAGGGGGTACCAGGTGGTCTTCTCACGACTGGAGAATGGAGCGCCACGAGGCCAGCCCAACATCATGGACGTCTCCCTACCCGATGCACAGGAGACTGTCATAACTGGCCTGCTCCCTGAGACCTCTTACTCTGTCACTGTGGCAGCCTACACCACCAAGGGAGATGGGGCACGCAGTAAGGCCAAGGTGGTCACCACAACAGGAGCAGTCCCAGGCAGGCCCACTATGATGATCAGCACCACCATCGGTAACACAGCCCTCATCCAGTGGCAACCTCCGAAGGAGATGGTGGGAGAGCACATGGGCTACCAGCTGCAGTACAAACGCATGGAGGAGGAGTCGTTCACCGTAAAAGACTTCAAGAAGATAGAAGACCACTTCACCGTCACCGGCCTGCACAAGGGCGCCACCTACATCTTCAAGCTCTGTGCCAAAAACCGGGTGGGCAACGGGGAGGAGTACGCAAAGGAGATTACCACGCCAGACGATGTGCCCAGTAGCTACCCCCAGAACCTGAGCGTTGTGGGCctgaccaccaccacaaccaAGCTGGCCTGGGAGCCTCCGGTGCTGGCTGAGAGGAACGGGAAGATTGTCCAGTACATTGTGGTGTACAGAGATATCAACAGCCAGCAGAACCACACCAACAGCACGACAGAGACCCAGATGACCATCATGGGGCTGCAGCCTGATACCACCTATGATATCAGGATCAGGGCATTCACCAGCAAGGGAGGGGGACCAATCAGTCCTAGTATACAGAGCAGGACCATGTCTACCGCCATGCCAGAGTTCACCAAAAACTTTGGTGTGAAAGCCGTGATGAAGACGTCAGTGCTGCTGACTTGGGAAGTGCCAGAAACATACAAGTCTCAAGTGCCTTTCAAAATACTGTATAACCAGCAGAGTGTGGAGGTGCAGGGGAACCTGAAGAGGAAGCTGATCACGAGGCTGCAGCCAGACACAGACTACAGCTTTGTGTTGATGTCTAGAGGGAACAGTGCTGGGGGTCTACAGCAGCAGGTCTCCATCAGGACCGCCCCGGACCTACTCAAGACCAAACCCATCCAATACCAACACGACCCAGAGGAGGGGGGCAAGCTCACCATCACCCTGCCCAAAGTCCCCACCACCGCCCCTGTCAGatatTACTACATAGTGGTGGTTCCTGTCACACCAGCCACACTACACAGGTGGGAGAACCCTGAAGATATGGACTTGGATGagCTCCTGGAGGCTAGTTCTGACCAGAGCCTGAAGAGGAGACAGACCCAAGAGTTCCTCAGACCCTACATCGCTGCCAAGATGGATGCTCTCCCAGACACCTTCCCTCTAGGAGACGAGAAGAAGTACAACGGCTTCTACAACAAGCCACTACCGGGCCAGCAGCAGTACCTCTGTTTCGTACTGGCTGCCCTCAAAGGCCACGAATCTCAGAAGACGTTTGCGGCCAGCCCATACTCGGACCCCATCACAGTGAAGCTCCACAGCGGTATGGCTCGCCATGCTGAGGACCCAGAGATGCTGTGGGTCATGGGCCCTGTCCTGGCCGTCgtactcatcatcatcatcgtcatcgcTATCCTGCTCTTCAAGAGgAAACGAGCATCTCCCTCTGCCAAGGATGAGCACTCTGTTGGGGTGAAGGACTCTCTGCTGGCCCACTCCTCTGACCCTGTGGAGATGAGACGACTTAACTATCAGACACAAGGGATGATGGAGCACCCTTTCATCTCCACCACTGATCTGGCTAACCACATCGAGCGACTTAAGGCCAACGACGGACTCCGCTTCTCACAGGAGTATGAGTCCGTAGACCCTGGACAGCAGTTCACGTGGGAACACTCTAACCTGGAAGTAAACAAGCCAAAGAACCGCTATGCAAATGTCATCGCCTACGACCACTCCAGGGTCATCCTCACCTCCGTCGACGGAGTGCCAGGTAGCGACTACATCAACGCTAACTACATAGACGGCTACAGGAAGCAGAACGACTACATCGCTACACAGGGCCCGCTTCCTGAAACCCTGAGTGACTTCTGGAGGATGGTGTGGGAGCAGAGGACCAACACTATTGTCATGATGACCAGGCTGGAGGAGAAGTCAAGGgtgaagTGTGACCAGTACTGGCCCAGTCGGGGTACAGAGACCTATGGGATGATCCAGGTGACCATGTTGGACACTGTGGAGCTGGCTACCTATAGCGTACGCACCTTCACCCTCTATAAGAATGGCTccagtgagaagagagaggttcGTCAGTTCCAGTTCATGGCCTGGCCGGACCATGGAGTGCCTGAGTACCCCACCCCCACCTTGGCCTTCCTGCGCAGGGTCAAGGCTTGCAACCCGACAGATGCAGGGCCCATGGTGGTCCACTGCAGTGCTGGTGTAGGGCGGACCGGTTGCTTCATCGTGATCGAAGCCATGCTGGAGCGTATGAAGCATGAGAAGTCTGTGGATATCTACGGTCATGTGACGTGTATGAGAGCTCAGAGGAACTACATGGTGCAGACGGAGGACCAGTACGTCTTCATCCACGAGGCCCTGCTAGAGGCAGCCACCTGCGGTAACACAGAGGTCCCTGCACGCAACCTGTACGCACACATCCAGAAGCTCACCCAGGTCACGCCCGGAGGCACCGTTTCCGCCATGGAGCTAGAGTTCAAGAAACTGTCTAACTCTAAAGCACATACCTCAAGATTCATCAGCGCCAACCTCCCCTGTAACAAGTTCAAGAACCGGCTGGTGAACATCATGCCTTTTGAGTCCACCCGCGTGTATCTGCAGCCTATCAGAGGTGTGGAGGGCTCCGACTACATTAACGCCAGCTTCATCGATGgatacagGCAACAGAAGGCCTACATAGCCACCCAGGGCCCGCTAGCAGAGACCACAGAGGACTTCTGGAGGATGCTGTGGGAACACAACTCTACCATTGTCGTCATGCTCACCAAACTCAGAGAGATGGGACGGGAAAAGTGCCATCAGTACTGGCCTGCTGAGCGCTCTGCTAGGTACCAGTACTTTGTAGTGGACCCCATGGCTGAGTACAACATGCCCCAGTACATCCTCCGAGAGTTCAAGGTCACAGACGCCAGGGATGGCCAGTCCAGGACCATTCGGCAGTTCCAATTCACTGATTGGCCAGAACAAGGGGTGCCAAAAACTGGAGAGGGCTTTATCGACTTCATTGGCCAAGTGCATAAAACCAAGGAACAGTTCGGACAGGATGGACCCATCTCTGTGCACTGCAGTGCTGGTGTTGGGCGGACTGGTGTGTTCATCACCCTGAGTATCGTGCTGGAGAGGATGAGGTACGAGGGGGTGGTGGACATCTTCCATACCGCCAAAACACTGAGGACCCAGAGACCTGCCATGGTGCAGACAGAGGACCAGTACCAGTTGTGCTACAGGGCAGCTCTGGAGTACCTTGGCAGCTTTGACCACTATGCAACATAATCACTCTCAGAATGCACTGGGACTCCTGGGGTTCCGGAGCGCCGCCAGTGTGTCCCTTCTGAGCCATATACACCCGGCTGACAAAGTCCAGAAACTGCctgaggggggaagggagaggggggaggaagaagggagaggggtgaggaggagagagagagagagcacaagtcTGACTGGGCGACCTTCAATCAGGTGGAGCAGTACTCCTGGACTGACTGGCATAATAAACCTGCTTTAAAACCCTCCACTACTAAAATCTACTCCTCAAGAAATTATCTAAATGCTCAGTGTGCTTCATTCTGACGTCTCTATACGTAATGCACACAACATAAAATCACTATTTCTGCCTCCTACTACTGCTGATATAGCAACGGTTATTTTTCTGCTTTTATTATGCATCAATATCAAAATTATTACCCATTATAAgtatgtgattattattattattattttgaattTATTGTCTAATCATTTATACTTTGGTTATTGTATGTCTTAACGTGTCTTATTTTAAATTAATTACTTGTCTTTTTTTGCACAAGGGACATGAATTTTTAATATGCTCCGAGTTATTATTAATACTGGAGACGTATGCATACTCAGAGCTGCTAataataattttattttttaccataaTTATAATATTCTAAAGTTCGCTATTCTCTGGTAGTATTCAGTGGTATATGGGGGACAATCTTTTATACACCTTTTCACTTCCTGGTACTTTACAAAACGACCAGCCATCTCCACAAAAAGAGATCAAACACATACACCAGAGTTAGTGGACTACTATAAAATAaacctatatacagtgcatttggaaagtattcagaccccttgactttttccacattttgttacgttgccaTTCTAGCATGgaataaaaacttgttttcgccCCATcactctacacactataccccata

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU2544928 lncRNA upstream 180123 32834445 ~ 32860018 (+) True G2225363
TU2544827 lncRNA upstream 329851 32709970 ~ 32710290 (+) True G2225263
TU2544815 lncRNA upstream 338377 32700944 ~ 32701764 (+) True G2225251
TU2544810 lncRNA upstream 341424 32698487 ~ 32698717 (+) True G2225246
TU2544742 lncRNA upstream 384280 32655385 ~ 32655861 (+) True G2225178
TU2545526 lncRNA downstream 163793 33542220 ~ 33542607 (+) True G2225927
TU2545527 lncRNA downstream 164789 33543216 ~ 33543505 (+) True G2225928
TU2545591 lncRNA downstream 251592 33630019 ~ 33630398 (+) True G2225985
TU2545595 lncRNA downstream 259980 33638407 ~ 33638732 (+) True G2225989
TU2545598 lncRNA downstream 262805 33641232 ~ 33642692 (+) True G2225992
XM_036969012.1 mRNA upstream 442641 32491177 ~ 32597500 (+) False LOC110521731
XM_021599552.2 mRNA downstream 2982 33381409 ~ 33430621 (+) False LOC110521735
XM_021599554.2 mRNA downstream 2982 33381409 ~ 33430621 (+) False LOC110521735
XM_036968612.1 mRNA downstream 2982 33381409 ~ 33430621 (+) False LOC110521735
XM_021599553.2 mRNA downstream 3522 33381949 ~ 33430621 (+) False LOC110521735
XM_021599555.2 mRNA downstream 6673 33385100 ~ 33430621 (+) False LOC110521735
TU2542282 other upstream 2173619 30863824 ~ 30866522 (+) True LOC110521703
TU2539452 other upstream 4018259 29021586 ~ 29021882 (+) True G2220253
TU2539165 other upstream 4490663 28549029 ~ 28549478 (+) True G2219991
TU2539163 other upstream 4492057 28547538 ~ 28548084 (+) True G2219989
TU2538335 other upstream 4732815 28293895 ~ 28307326 (+) True fip1l1a
TU2545552 other downstream 193713 33572140 ~ 33604894 (+) True G2225948
TU2548066 other downstream 1803542 35181969 ~ 35190151 (+) False LOC110521757
TU2548536 other downstream 2139807 35518234 ~ 35519242 (+) True G2228777
TU2548634 other downstream 2314883 35693310 ~ 35735400 (+) True LOC110521768
TU2548707 other downstream 2422605 35801032 ~ 35802968 (+) True LOC110521770

Expression Profile

XM_036968467.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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XM_036968467.1 Expression in each Bioproject

Bar chart with 13 bars.
XM_036968467.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 7.
End of interactive chart.