RNA id: XM_036969206.1



Basic Information


Item Value
RNA id XM_036969206.1
length 1422
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC110521738
representative False

Chromosome Information


Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 33434085 ~ 33557781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGAGATGTTCCCTCCCACTGTCAGTGTTGGGTCCACTGTGTTGTGTGTGCTGATGGTGCAACTGTACAGTGACCGCTATTTACCTTTTGAGGAGGGTTCCACGTACACTCGCTGCTGGATATCAATTTGAAATTGACGCTGGAGATGGACAGTTAGCTTGCATATAAAGACGAAATGTTTATCTTAGCTATCAGTCACTTCTGGGACACGTATCATCAAAGAAACGGATGGTGCCATGCACAGTAGAAGGGGATGAGAATCATGAAGCCAACCCGTCACCTGCTCCTGGTGCTTTGTCCCATGGTGGTCCTGGGCTTCCTCTACTACTCCTCTGGGAGACTGCACCCCTGGGGCTGGGGACATAAATCATCACAGAAAGACCTGGATAGTTTTTTCTCCGTGGGACGATTATTTCACTCAGTGTATGACAAACAGGGATTCTTGCTGAAGTTGGATGGTAATCTGCCTTTGGAGCTGATGTACAAGTATGGCAATCTCAGCGAGGGAGTCTGCAAGCCTGGCTATGCAGCTGCTAAGATGACTGCCATTTATCCAAAGTTCACTAAACCAGCCCCCATGTTCCTTGATCCGAATTTTAGACGATTCGCCAAAATCAGCAAATTCTTCCCACCCTTTGGAATGAAAATGCAAGAAAAGATCATAGATAATATTCTGACAGCCACAAAGAGCTATGGTCTGGAAGATGAGCTGGACAGTCTGAGTTGTAAAAAGTGTATAATCATGGGAAATGGTGCTATTCTGACCAACAAGTCTATGGGTGCAAGGATTGACGAGTACAATGTAATTGCAAGGTTGAACGAGGCCCCAGTGAGTGGCTATGAGAAAGATGTGGGCTCCCGGACCACTATGCGTATCACCTACCCAGAGGGAGCCATCCAGAAGACTGAACGCTACGAACAGGACTCCCTCTTCGTTCTCTCTGCCTTCAAAGCTCTCGACTTCAAATGGCTGCGGTCCATGATCTTTAAAGAGAGGCTGCATAGTACAGATGGGTTCTGGAAGTCTGTGGCCCATCATGTCCCCAGGGAGCCCAGTGAGATGAGGATCCTCAACCCTTACTTCATCCAGGAGGCTGCCTTCAGGTTCATTGGCCTGCCACACAACAAgggacagatggggagagggAATATTCCGACACTGGGGACTGTTGCCATAACAATGGCCCTCCATAACTGTGATGAGGTAGCCGTCGCTGGATTTGGTTATGACATGAGTACCCCCCACGCTCCCCTACACTACTATGAGAAGATCAGGATGGTGGCCATCAAACAGGCGTGCTGAGGAATGTGACACCAGTCCGGTGTCACCTGCACCAGTTTCACGCATCtggcctccagtgcacctccccagtccggtatgtcctgtgtctcctccacgcactcgccctgaagtgtgtgtca

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2545159 lncRNA upstream 53704 33355135 ~ 33380381 (+) True G2225583
TU2545378 lncRNA upstream 224169 33205021 ~ 33209916 (+) True G2225783
TU2544928 lncRNA upstream 574067 32834445 ~ 32860018 (+) True G2225363
TU2544827 lncRNA upstream 723795 32709970 ~ 32710290 (+) True G2225263
TU2544815 lncRNA upstream 732321 32700944 ~ 32701764 (+) True G2225251
TU2545591 lncRNA downstream 72238 33630019 ~ 33630398 (+) True G2225985
TU2545595 lncRNA downstream 80626 33638407 ~ 33638732 (+) True G2225989
TU2545598 lncRNA downstream 83451 33641232 ~ 33642692 (+) True G2225992
TU2545620 lncRNA downstream 109803 33667584 ~ 33711600 (+) True G2226009
TU2545649 lncRNA downstream 155023 33712804 ~ 33713050 (+) True G2226034
XM_036968612.1 mRNA upstream 3464 33381409 ~ 33430621 (+) False LOC110521735
XM_021599566.2 mRNA downstream 104648 33662429 ~ 33664964 (+) True LOC110521740
XM_036969005.1 mRNA downstream 952263 34510044 ~ 34513866 (+) False LOC110520955
XM_021598407.2 mRNA downstream 952268 34510049 ~ 34513894 (+) True LOC110520955
XM_021599581.2 mRNA downstream 979063 34536844 ~ 34685436 (+) False LOC110521747
XM_021599582.2 mRNA downstream 979065 34536846 ~ 34685436 (+) True LOC110521747
TU2542282 other upstream 2567563 30863824 ~ 30866522 (+) True LOC110521703
TU2539452 other upstream 4412203 29021586 ~ 29021882 (+) True G2220253
TU2539165 other upstream 4884607 28549029 ~ 28549478 (+) True G2219991
TU2539163 other upstream 4886001 28547538 ~ 28548084 (+) True G2219989
TU2538335 other upstream 5126759 28293895 ~ 28307326 (+) True fip1l1a
TU2545552 other downstream 14359 33572140 ~ 33604894 (+) True G2225948
TU2548066 other downstream 1624188 35181969 ~ 35190151 (+) False LOC110521757
TU2548536 other downstream 1960453 35518234 ~ 35519242 (+) True G2228777
TU2548634 other downstream 2135529 35693310 ~ 35735400 (+) True LOC110521768
TU2548707 other downstream 2243251 35801032 ~ 35802968 (+) True LOC110521770

Expression Profile


XM_036969206.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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XM_036969206.1 Expression in each Bioproject

Bar chart with 16 bars.
XM_036969206.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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