RNA id: XM_036969307.1


Basic Information

Item Value
RNA id XM_036969307.1
length 3583
RNA type mRNA
GC content 0.51
exon number 30
gene id LOC110521760
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35405569 ~ 35492375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTAGCTACAGTGTTTTGAGTAACAATCCACACCATACCAAATTGTACTCAACTCAACTCAACCCAGCTCCTGCGCTGATGGCTCTGATGCTCCGAGGGGGATGAAGATGAGTGCGTGATGACATCATCGCCGACTGGGCGTTGCAGGAAGTGGCAAACAAAGTTGATATCTGAAAAGGTGGAGCAGTGGGCAAGGAGAGCGAGACTGAACAGGCAGCTTTGAACCTTCCTTCTCTACGGCTTAAGGTTGCTGACTGATTCTTCCTGTGTTCCTGCACACGCGTGACGATCAGCGTGACCTACCATGTCTCGTGTCCGCCAGCCCCCGCTGGTCACGGGCATCTCGCCCAACGAGGGCACCTCATGGACCAAGGTCACCATCCGAGGAGAGAACCTGGGCACGGGTCCCGCTGACCTCGTTGgtctgtcCATATGTGGTCACAACTGCTTGCTGACGGCTGAGTGGATGTCAGCCAGTAAGATAGTGTGTCGTGTGGGCCCAGCCAAAGACGATAAGGGAGAGATCATCGTCAGCACCAAGTCAGGAGGCCACGGCACCTCCACCGTCTCCTTCAAACTGCTCAAGGCTGAGAAGATCGGTATTCTGGACCAGTCTGCTGTGTGGGTGGATGAGATGAACTATTACGACATGAGAACCGACCGCTACAAAggcatctcccccctctccctacgGCCCAGCAATCCGCTAGGCATCGACTTTGACAAGGGTAAGGTCCCTCTGAAAGATCTGGAGGCATTGTTTCCAGGTGTGAGTGGAGAGTTCACCAGCGAGAACTTCTCAGCTACTTGGTACCTTATCGAGAACCACTCTGTCACCAGTTTCGACCAGTTGCGTATggcagccagtaacctgaagaagCAGGCCACTAAGAAGAATGAGGGCAGTCTGGCCTATGTGAAGGGAGGCCTCAGCACCTTCTTCGAGGCTCAGGATGCTCTCGCAGGGTTGATGGAACTTGGCTCTCATGATGCAGCTATACACCAGAGGTTGGAGTCAGACGGGACAGAGAGGGTGGAAGGCTCCATGACACAACGCCTGGAGAATGTTCTCAACAGAGCCAGTGATACAGCAGACACTCTGTTCCAGGAGGTGTTGGGGCGGAAGGATAAAGCTGACTCGACGCGGAACGCCCTCAACGTCCTGcagcgcttcaagttcctcttCAACCTGCCGCTCAACATCGAACGCAACATACAGAAGGGAGATTATGACGTGGTGATCAATGACTATGAGAAAGCCAAGTCTCTGTTCAGCAACACGGAGGTCTCGGTCTTTAAAAAAGtgtatgCCGAGGTGGAGACGAGGATCGGGGCTCTGAAGATTCTGCTCCTGGACAAGCTACTGGAGACACCTTCAACCCTGCATGACCAGAAGAGATACATAAGGTACCTGTCTGACCTGCATGCATCAGGGGACCCTGCCTGGCAGTGTATCTCCGCCCAGCACAAGTGGATCCTCGGACTCATGCAGAACTGCAAGGAGGAGTTTATCAATTACCAGAGAGtGGGCTTGGGGGCCATAGCCCTGGATCTAGAGGGGGACCCTCGCCCATCGGCTTTCAGTAGGATCAGGGACACAGCTCCTCTGAATAAGGGGGGCATCTTGCATACCCCACGCCACAGCACCTGGCATTATGAGACACCCCAGCAGGTGCAGTTTGTGGAGAAGCTGTCGGACGTGGTGATTGGCCAGCTCCCCAACTTCTGGAAGCTCTGGATCTCCTACGTCAACGGCAGCCTCTTCAGCGAGACTGGAGAGAAATCTGGCCAGGTTGAAAAGTCAAAGAAGAatgccaggcagagacagaacGACTTTAAGAAAATGATAGAGGAGGTGACTCATCGCTTGGTGAAGCTGGTGAGAGGTGCTCTGCTCCcctccaccctgacagagctggagctGAGATTGTACGGTGGCTGGGAGAATAAGACTGAGCTCACTGGACCCTGGCTCACTCAGGTCATACACATCGTTAGAATAATTTTTGAGGCTCTGGTAGCTCTCGAGATCCCCAATGATCTACTGCAGGTGATCCAGGATCTATTGTTAGAGCTGAGACACCACTGTCTACTGGTCACCCTGCACCACACCGCAGAGGATGTCAAAAGGGTTGCAGAGAAAGAGGACTGGGTCGTAGACAATGAAGGAATCACCAGCCTGCCGGCCCAGTTTGAGCAGTGCATGGTGCAGATGCTGCAGTCACTCAAAGAACCCATGGAGACCAAACCTGGGGAGGTCAATaTCCTCCAGTTGGATCAGGACCAGGCCTCAGAGCTCTGTGTGGACATCATAAAGGTGTTCATCAACTGCCTGGAGCAGCTGAGCACtaaaacagacagagacatcGACACCTCACGTATGTCCGTGGACCAGGCCTCTCCAAACTTGTTCAGTGGCATTCAGGAGGACTTCTGTCCAACACTGGAGCAGCGTCTGCTGATCATCCTCAGTAACTGTCAGTACCTGGAGAAACACACCTTCCTTAATCTGGCTGAACACTTTGAGCGACACGGATTCACTGGGACTGAGAAGATCACACGGGTGACTGTACATGCTGTGAAGGAGTTAGATGAGAGTTTGTTTGATGCCTACATCGAGAGGAAGTCTGATCCCATCGTAGGATCCCTGGAACCAGGCATCTATGCTGGACACTTCGACTGGAGAGACTGCGGAACACCCACAGGTGTGAGGAACTACCTGAAAGAAGCCTTGGTGAACATCATCACTGTCCATGCAGAGgTCTTTACAGTGTCTAAGGACCTAGTTCCCAGGGTTTTGAGTAGAATCATTGAGGGTGTGGCGGAAGAGATGAGTCGCCTGATGCAGTGTGTCTCCTCCTTCAGCAAGAACGGAGCCATACAGgccCGTTTGGAGATAGATTCTCTGAGAGATGCTGTAGCCTCCTACCTGTCATCTGAAAGCCACGCCAGCTTCAAGCAGGCTCTGGAGGTCCTTCCCCAGCTACACAACGGAGCAGACAAAAAgttACTGGAGGAGCTGCTGAATAAGTTTAAGAGCAGTATGCAGCTCCAGCTCACCTGTTTCCAGCCCTCTAATGTCCAGCCTGTCAAGAGATGAGTCTGTACAATGTCTCTTCAACATTAATATAATGGCACTATAGTATCTCTATCAAATATGTGCAATGCCTATTTACTTGCACCGATAAACTCTCGTAGCTTTTTGTTAAATAGTTATAAGATCTAGAATGGAAATTAGCACACTAGTCTTTTTCACGCTAATCTATTTTTTAATCTTAGATATGCACATTCATTTTCTGAGTTAATCTCATAGTTAATCTGGGCAGCCCCTCTACTGTGGAATCATGCTAATTATGCTATTGTTAGATGGCCACTCATCTAGAAATCAGCATCCCAGTCCCTTGTAGGCAAGCTAGGTCATGCTAGCCTGGTGTTTGAGACAAGACTGTCTCTCTTCTACTGAGAAACCAGTCAACATATGTGGTCCCTGATTTCTGTATGTTCATAAAGAAACTGCACATTATGCTCTGTCCTCTTATTACTGTCTCCATTGCCAAATAAAGACACATTTATATTATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2548376 lncRNA upstream 37097 35368122 ~ 35368472 (+) True G2228636
TU2548375 lncRNA upstream 38251 35366982 ~ 35367318 (+) True G2228635
TU2548370 lncRNA upstream 44099 35361235 ~ 35361470 (+) True G2228630
TU2548358 lncRNA upstream 54307 35350907 ~ 35351262 (+) True G2228618
TU2548292 lncRNA upstream 65257 35340082 ~ 35340312 (+) True G2228552
TU2548541 lncRNA downstream 33108 35525483 ~ 35525695 (+) True G2228782
TU2548544 lncRNA downstream 38494 35530869 ~ 35531082 (+) True G2228785
TU2548584 lncRNA downstream 113483 35605858 ~ 35606235 (+) True G2228825
TU2548570 lncRNA downstream 125619 35617994 ~ 35618259 (+) True wu:fi04e12
TU2548573 lncRNA downstream 142582 35634957 ~ 35635306 (+) True G2228814
XR_005040941.1 mRNA upstream 215360 35181902 ~ 35190209 (+) False LOC110521757
XR_005040942.1 mRNA upstream 215360 35181902 ~ 35190209 (+) False LOC110521757
XR_005040943.1 mRNA upstream 215360 35181902 ~ 35190209 (+) False LOC110521757
XM_036968940.1 mRNA upstream 288811 34960599 ~ 35116758 (+) True LOC118945793
XR_002473207.2 mRNA upstream 472932 34927630 ~ 34932637 (+) True LOC110521755
XM_021599609.2 mRNA downstream 51132 35543507 ~ 35545435 (+) True psmg4
XM_036968811.1 mRNA downstream 89898 35582273 ~ 35618259 (+) False wu:fi04e12
XM_036968812.1 mRNA downstream 89899 35582274 ~ 35618259 (+) False wu:fi04e12
XM_036969191.1 mRNA downstream 127544 35619919 ~ 35634039 (+) True tbc1d7
XM_036968987.1 mRNA downstream 231521 35723896 ~ 35734960 (+) False LOC110521768
TU2548066 other upstream 215418 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 1800675 33572140 ~ 33604894 (+) True G2225948
TU2542282 other upstream 4539047 30863824 ~ 30866522 (+) True LOC110521703
TU2539452 other upstream 6383687 29021586 ~ 29021882 (+) True G2220253
TU2539165 other upstream 6856091 28549029 ~ 28549478 (+) True G2219991
TU2548536 other downstream 25859 35518234 ~ 35519242 (+) True G2228777
TU2548634 other downstream 200935 35693310 ~ 35735400 (+) True LOC110521768
TU2548707 other downstream 308657 35801032 ~ 35802968 (+) True LOC110521770
TU2550824 other downstream 2092651 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 2830985 38323360 ~ 38336981 (+) True G2231371

Expression Profile